Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02050 723 / 0 STP7 sugar transporter protein 7 (.1) AT5G26340 531 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G77210 527 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT3G19940 504 / 9e-176 Major facilitator superfamily protein (.1) AT1G50310 476 / 1e-164 ATSTP9 sugar transporter 9 (.1) AT3G19930 473 / 2e-163 ATSTP4, STP4 sugar transporter 4 (.1) AT1G11260 472 / 6e-163 ATSTP1, STP1 sugar transporter 1 (.1) AT5G23270 470 / 2e-162 ATSTP11, STP11 sugar transporter 11 (.1) AT4G21480 464 / 5e-160 STP12 sugar transporter protein 12 (.1) AT5G26250 457 / 3e-157 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019070 [exp] 601 / 0 AT4G02050 538 / 0.0 sugar transporter protein 7 (.1) Lus10013441 [exp] 524 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002450 [exp] 518 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 518 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 516 / 1e-179 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10022421 [exp] 514 / 2e-179 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10018422 [exp] 475 / 5e-164 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10009656 [exp] 461 / 2e-158 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10002597 [exp] 457 / 2e-157 AT1G11260 798 / 0.0 sugar transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189100 [exp] 733 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.018G113300 [exp] 729 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.018G085200 [exp] 538 / 0 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.001G253800 [exp] 536 / 0 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.008G151100 [exp] 509 / 1e-177 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 507 / 8e-177 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 504 / 6e-176 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.004G233500 [exp] 504 / 9e-176 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G072800 [exp] 500 / 4e-174 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 495 / 3e-172 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10036325 pacid=23169372 polypeptide=Lus10036325 locus=Lus10036325.g ID=Lus10036325.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGGTCATTTGGTCCGGGTGGGGTGGGAAAGGAGAGGGCACAACAGTACCAAGGAAAAGTGACTAGCTCTGTCATCATTGCTTGTTTTGTTG CAGCAATTGGTGGCTCCCTCTTTGGCTACGATGTTGGTGGGGTCACATCCATGGATGGATTTCTGAAGAAGTTCTTCCCTCAAGTTTATGAGAAGAAGCA ACATGCCCATGAAAACAACTATTGCAAGTTTGATGATCAGGGGCTCGCAACTTTCACCTCTTCTCTTTACCTTGCTGGTCTGGTTGCATCCCTGGTGGCG AGTCCAATAACAAGAGCTTACGGTCGTCGCATCACTATAATCATCGGTGGCTTCAGCTTCTTGATGGGAGCATCGTTGAATGCTGCAGCGGTCCATATAG CAATGCTGCTGCTAGGCCGCATATTGCTTGGTATCGGCATTGGATTCGGGAATCAGGCTGTTCCACTATACCTATCAGAAATGGCACCAACCCATCTTCG AGGAGGACTGAATATGCTGTTTCAGTTGGCGACAACTCTTGGGATCTTCTCGGCGAACATGGTTAACTATGGAACTCAGAAGCTTGAGCCTTGGGGTTGG AGGTTATCATTGGGATTGGCAGCAGTTCCAGCTTTGTTAATGGCAATAGGTGGAATGCTGCTTCCTGAGACACCTAACAGTTTAATTGAAAGAGGGTTAG AAGAGAAAGGAAGAAAGGTACTGGAGAAAATCAGAGGAACAACAAATGTAGAAGCAGAATTCGAGGATATGGTGGATGCGAGTGAGGTGGCTAACTCAAT CAAACATCCATTCAGGAACATCCTTGAACCAAGGAATAGGCCGCAACTGGTTATGGCAATCTGCATGCCAGCATCCCAAATCATGACTGGCATAAACTCA ATCCTCTTCTATGCTTCGATGTTGTTTCAGAGCATGGGTTTTGGGAGAGATGCTTCCCTGTACTCATCAGCCTCAACAGGTTTGGTGCTCTTCCTCTCAA CTTTCCTATCTATTGCAGCAGTTGACAAATTGGGGAGAAGACTGCTACTCATCAGTGGCGGAATCATCATGATCGCCTGCCAGGTGACCGTCTCCATAAT CCTGGGGCTCAAGTTTGGGAATAACGAGCAGTTGTCAAAAGGGTACTCAGTTTTGGTAGTGGTCGTTATCTGCCTTTTCGTGCTGGGATTCGGGTGGTCA TGGGGTCCTCTTGGATGGACTGTTCCCAGTGAGATATTCCCATTGGAGATCCGTTCAGCTGGACAGAGCATTACAGTGTCGGTTAACTTTCTCTTCACAT TCATCATAGGCCAATGCTTCCTTTCCATGCTTTGTGCTTTCAAATTTGGCATCTTCCTTTTCTTTGCTGCCTGTGTCACCGTTATGACTGCATTCGTCTA CCTATTCCTCCCTGAAACCAAAGGAGTCCCCATCGAAGAAACTGTCTTCTTGTGGAGAAGACATTGGTTCTGGAAGAAGATAGTTGGTCAGGAACTAGAA TCATATGGAACTCGTATATGA
AA sequence Show only first row Show all	>Lus10036325 pacid=23169372 polypeptide=Lus10036325 locus=Lus10036325.g ID=Lus10036325.BGIv1.0 annot-version=v1.0 MAGGSFGPGGVGKERAQQYQGKVTSSVIIACFVAAIGGSLFGYDVGGVTSMDGFLKKFFPQVYEKKQHAHENNYCKFDDQGLATFTSSLYLAGLVASLVA SPITRAYGRRITIIIGGFSFLMGASLNAAAVHIAMLLLGRILLGIGIGFGNQAVPLYLSEMAPTHLRGGLNMLFQLATTLGIFSANMVNYGTQKLEPWGW RLSLGLAAVPALLMAIGGMLLPETPNSLIERGLEEKGRKVLEKIRGTTNVEAEFEDMVDASEVANSIKHPFRNILEPRNRPQLVMAICMPASQIMTGINS ILFYASMLFQSMGFGRDASLYSSASTGLVLFLSTFLSIAAVDKLGRRLLLISGGIIMIACQVTVSIILGLKFGNNEQLSKGYSVLVVVVICLFVLGFGWS WGPLGWTVPSEIFPLEIRSAGQSITVSVNFLFTFIIGQCFLSMLCAFKFGIFLFFAACVTVMTAFVYLFLPETKGVPIEETVFLWRRHWFWKKIVGQELE SYGTRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	0	1
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	2.4	0.7845
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	2.6	0.8509
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10016311 [exp]	6.0	0.7348
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	6.5	0.7990
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10010803 [exp]	13.2	0.7192
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	14.5	0.7424
AT5G59050			unknown protein		Lus10001433 [exp]	16.3	0.7575
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	16.6	0.7416
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	19.6	0.7537
					Lus10029119 [exp]	21.0	0.7028

Compare expression of checked genes

Lus10036325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.