Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35170 657 / 0 adenylate kinase family protein (.1.2) AT5G47840 261 / 4e-84 AMK2 adenosine monophosphate kinase (.1) AT5G50370 125 / 1e-32 Adenylate kinase family protein (.1) AT5G63400 123 / 4e-32 ADK1 adenylate kinase 1 (.1.2) AT2G37250 122 / 3e-31 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 113 / 8e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25280 97 / 9e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 94 / 9e-22 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 89 / 5e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01820 59 / 2e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019071 [exp] 794 / 0 AT5G35170 720 / 0.0 adenylate kinase family protein (.1.2) Lus10037995 [exp] 223 / 3e-70 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009478 [exp] 214 / 2e-67 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10009228 [exp] 214 / 5e-66 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10003504 [exp] 195 / 1e-58 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10016757 [exp] 123 / 6e-32 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 120 / 5e-31 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10023476 [exp] 116 / 8e-29 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10040358 [exp] 115 / 1e-28 AT2G37250 405 / 1e-143 adenosine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113400 [exp] 717 / 0 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.013G103400 [exp] 256 / 1e-81 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 249 / 4e-79 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.006G189201 [exp] 173 / 3e-52 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 130 / 1e-34 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 121 / 3e-31 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.008G046100 [exp] 117 / 1e-29 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 115 / 1e-28 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.014G104700 [exp] 93 / 1e-21 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 91 / 1e-20 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase CL0023 [flax] [poplar] PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10036326 pacid=23169455 polypeptide=Lus10036326 locus=Lus10036326.g ID=Lus10036326.BGIv1.0 annot-version=v1.0 ATGATATCTGGCGCTCCGGCTTCCGGCAAGGGAACTCAGTGCGAGGTTATTGTTCAAAAGTTTGGATTGGTGCACATATCTACTGGAGACCTCTTGAGAG CTGAAGTGTCAGCTGGGACAGAAATTGGGAATAAGGCTAAGGAGTTCATGAATGCTGGACGTTTGGTTCCTGATGAAGTTGTCACTGCTATGGTCACAGC GAGACTTTCAAGGGAAGATGCAAAGGAGAGAGGTTGGCTTCTCGATGGCTATCCGCGCACTTCTTCCCAAGCCGAGAGTCTGCAGAAACTCAACATCAGA CCAGATATCTACATTGTGTTGAATGTTCCGGATGAAGTCCTAATCGACAGATGTGTTGGTAGAAGGCTGGATCCTGTGACGGGAAAGATTTACCACGTTA AGAACTTCCTTCCCGGGACTGACGAAATCAAAGCAAGGCTTACTGTGCGTGCTGATGACACTGAGGAAAAGGTGAAATCTCGACTTCAGATCTATAAACA AAATGCTGAAGCCACATTCTCCACTTATTCAAATGTAATCAAACAGATAGATGGAAACCGTTCGAAAGAGGTCATTTCTGGGGAGATTGTGAGCCTGCTG ACCGAATTGCAGGAGGAAAAATCCAACCCAATCAAATCAGGTGCGTGTTTGTGTTTGTGTTTGCGCACACACAATCAGTTTCGGGGAGCGTGGAGTTTAA AGTCCTGCCGTTATTTTGCAGGAACATCTGTAATTGCAAGTAAGAGCAATCCCAGTGAGACATCAGCTAATCAGGAGATATGGAGAGGGATCCCTACTAG ATTGAACAATATCCCCCATTCTAGAGAAATCAGGAATTACTTCTACAATGATGTTCTTCAAGCGACTCAAAGAGCTGTAAATGATGGTAGAACCCGTTTA AGGGTCAGTTTGCATACTAACGCCATTAACACTGAGATTCAAGTCGATATCAACATCCCGGAGCTTAACCCTGATATGGTATGTGTTCAAGGGTCTATGG GTGTCGGTGCCCTCGCTGGGATGCCACTGCAACTTGCTGGTACCCGAAAGATCTTGGAATACATGGATTGGGGTAACAATGGTGCCATGGGGACCTTTGT CAATCTCGGTTCGATAGGTGCACAAGAAGTGGAAGAACAAGATGATATGTTCATCTTAATTGCTCCTCAAAATGCTGTAGGAAATTGCATCATCTATGAT TTGCCTGCCTCAAGTGGAATCATGCAAACAATGGGACGTGAAGAAAGACTCCGTTATGCTGCTTCCTTTGAAAGTTGCTACTCCTTCCGACTTCTCTATT ATGCAGGATCTCAATATCCAATCATGGGAGCTCTAAGGATGGCATATCCATACCCTTATGAACTGTTCAAGAGGGTAGATGACGAGCCAGGAAAAGAGAA GTATTTAGCTTTGGAAACATTTCCAGAGAAACCAACTTCTGACGAGATCAATAACGCTTTCCTGGGTAGAACAAGAGATGAAGCCAAGAAAGCCTCAGGA TTCTGGTATGCATCTCTATATCTTCCTTGA
AA sequence Show only first row Show all	>Lus10036326 pacid=23169455 polypeptide=Lus10036326 locus=Lus10036326.g ID=Lus10036326.BGIv1.0 annot-version=v1.0 MISGAPASGKGTQCEVIVQKFGLVHISTGDLLRAEVSAGTEIGNKAKEFMNAGRLVPDEVVTAMVTARLSREDAKERGWLLDGYPRTSSQAESLQKLNIR PDIYIVLNVPDEVLIDRCVGRRLDPVTGKIYHVKNFLPGTDEIKARLTVRADDTEEKVKSRLQIYKQNAEATFSTYSNVIKQIDGNRSKEVISGEIVSLL TELQEEKSNPIKSGACLCLCLRTHNQFRGAWSLKSCRYFAGTSVIASKSNPSETSANQEIWRGIPTRLNNIPHSREIRNYFYNDVLQATQRAVNDGRTRL RVSLHTNAINTEIQVDINIPELNPDMVCVQGSMGVGALAGMPLQLAGTRKILEYMDWGNNGAMGTFVNLGSIGAQEVEEQDDMFILIAPQNAVGNCIIYD LPASSGIMQTMGREERLRYAASFESCYSFRLLYYAGSQYPIMGALRMAYPYPYELFKRVDDEPGKEKYLALETFPEKPTSDEINNAFLGRTRDEAKKASG FWYASLYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	1.4	0.9604
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	3.2	0.9283
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	3.2	0.9414
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	3.6	0.9226
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	3.9	0.9409
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	4.0	0.9385
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	4.9	0.9323
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	5.5	0.9343
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	6.7	0.9350
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	7.0	0.9325

Compare expression of checked genes

Lus10036326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.