Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09850 450 / 4e-147 D111/G-patch domain-containing protein (.1) AT1G17070 64 / 3e-10 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 63 / 7e-10 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT2G24830 52 / 9e-07 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT3G54230 45 / 0.0003 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019584 [exp] 730 / 0 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10019073 [exp] 328 / 3e-102 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10002252 [exp] 70 / 6e-12 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 69 / 1e-11 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10020095 [exp] 52 / 2e-06 AT2G24830 471 / 8e-163 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10026901 [exp] 52 / 2e-06 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113600 [exp] 592 / 0 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 517 / 5e-174 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 70 / 4e-12 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.013G076000 [exp] 67 / 5e-11 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G016200 [exp] 50 / 4e-06 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Potri.004G081800 [exp] 44 / 0.0005 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10036327 pacid=23169358 polypeptide=Lus10036327 locus=Lus10036327.g ID=Lus10036327.BGIv1.0 annot-version=v1.0 ATGGGCGGAAGAGGTAAGAGAAGACCGAACAACAATGGCGGCAACAGAAGCGACACGAAGAACAAAAGTGGGAGTGGTGGCGGGAGGAGATCGAATTCGT CACATAGAGGCGGGAGCTCCCTCTTCATTGATGGCGGCATCTTATCGGATTGGCAAGAATGGAATTATCATGCGGTGAATTCAGAATCTGCGTCAAGATC AGGGAACCGTAACCGAACCAAGGAACCTTCCACCTCTAACAAAGGGGTCCCCATTTCTGCGGGAAATGCTATTGGTTATAGCTATCCTGTCGTTGAGCAA CAGGAGGGTTCGTCTTCAAACCTTTCTGGGCAGGGACATGGTGCAAGCAATACCTTCGATGCAACCCATCCTATTACTTTGTTTAGCTCCAACAAGACCC CAATTGTTGCTTATTTAGATGAAACACCAACTTCAGATCCCCAAAACGAGGATGTAACTTATGAATATGCTTCCAGTTTTACGGTTAATGATGGTTTGCA TAGAGGTCTGGGGTTCCATGATGAGTTGGAGGCATCTCCTGCTGGTATTGAGTCATCACCGAAGCAATCGGAAGAGATAGAACAAGAAGGACCACCTTTT GATTCATCACCCTCTGAGAACGAAATGGATGCTGATCCTCTTGGTAATGAGGTTGGAGAAGAAGACGTAGATGGAGAAGATTCGGCAGAGTCATATACTA AAGTTAGAAATCCGGCATTCTTGTCTGTTGGAGGAATGAGATTGTATACCCATGACATTTCTGATGAGGAAGGTGATGAGGTAGATTGTTCCGAGTCATT AGATGATGACAGCTCTGAATCCGAACAAGCGCAAGAAGATTCATCTGAAAGTGATGACTCCGAGAACATGTCTGACAGTGACTTAGACCTCAATGATGAG GTTGCAGAGGATTACTTACAAGGAATTGGTGGCAGTGTCAAAGATGCCAAATGGTTGGTCGAACATGATTTGGATGATTCTGAGGAAGGTAGCTCTTCTT CTAGTGGTGGCTTTAATGAGACAATAGAGAAGTTAAGTGGAATTGCCCTCCAAGAAGCATCAATGGGATATGGTATGACGACACCACAGCCAAGAAAGAA GATCCCTGGTAGTGCTAGAGACTCTTGGTCATCAGGCTCTGATGATATCATGTTTGTGAAAGATCCGAGGACTGTGTCTGGCAAGAAGAAGCATGTTGCC CAACTGCCTCAATCCTGGCCAGCAGCTCAAAAGGGTAAACGTTACAGAAACTACCCAGGAGAAAAGAAGAAATTCCGCAAAGAAATGATCGCTGAGAAAC GCCGTGTCAGAATGCTGCAGCGAGGGGTTGACTTGGAGGAGATAAATATGAAACTGGAGCAGATAGTTTCAAATAAAGTGGATTTATTTTCTTTCCCGCC TATGCATTCAAAGGATTGCTCACAGGTAAAACGGCTTGCAGCAATTTACCGTTTGCGTAGTGGGGCCCAGGGTTCAGGGAAGAAAAGGTTTGTCACTGTG ATGCGTACTCAGCATACATCCATGCCATCTGCGAATGATAAAGTCCGCCTTGAAAAGCTCATTGGAGAAACCTGCAAAGATGAAAATTTCTCTGTCGTTG AAAGGAAGTCAGCAAGTGCCGAGAGAAGAATACAGAACAATCCAAAGGGGAGTGGCATAAGCAATTTGGAACGTCCCAGTCGGATCAAACCATCCAGAAA ACCCAGCAATCGCCAGAACAATACCATACCACCAATGAAACAAGGGGGGAGAAAGGCTGCCGATTACGCGAGTCAACCCGTATCATTTGTTTCATGTGGT GTGATACAATCCGAGGTCGATGCAGAGAACACAACCATGGATCCCAAGGAGAAGCACAAAGCTGTTAAGGAGAAGGCTTTGGTGATCGAGTCAGACAAGG TTGGTGCATTTGAACTGCACACCAAAGGGTTTGGATCCAAAATGATGGCCAAAATGGGATACATAGAAGGAGCTGGTCTTGGGAAAGATGGCCAAGGTAT AGCTGCACCCATCGAAGCAATTCAACGACCCAAGTCTCTAGGACTCGGCGTTCACTTCTCCAACACTGATGTTGAACAACCTGCCAAGGCTGAAGGTCAA AGTGCTCGTAAACCCGCAGGACCACGAAGTGCACAAAAAAGTGGAGCACGAGCACAAGAAAAGCGTCCTCAGCCGCAGGGATTGGGAGATTTCGAGAGGC ATACCAAAGGGTTTGGGTCAAAGATGATGGCCAGGATGGGGTTCGTCGAAGGATCTGGGTTGGGTAAAGATTCACAGGGTATGGTTAACCCTTTGGTCGC TGTTAGGCGTCCGAAAGCACGAGGACTGGGTGCCAAAGGTTAG
AA sequence Show only first row Show all	>Lus10036327 pacid=23169358 polypeptide=Lus10036327 locus=Lus10036327.g ID=Lus10036327.BGIv1.0 annot-version=v1.0 MGGRGKRRPNNNGGNRSDTKNKSGSGGGRRSNSSHRGGSSLFIDGGILSDWQEWNYHAVNSESASRSGNRNRTKEPSTSNKGVPISAGNAIGYSYPVVEQ QEGSSSNLSGQGHGASNTFDATHPITLFSSNKTPIVAYLDETPTSDPQNEDVTYEYASSFTVNDGLHRGLGFHDELEASPAGIESSPKQSEEIEQEGPPF DSSPSENEMDADPLGNEVGEEDVDGEDSAESYTKVRNPAFLSVGGMRLYTHDISDEEGDEVDCSESLDDDSSESEQAQEDSSESDDSENMSDSDLDLNDE VAEDYLQGIGGSVKDAKWLVEHDLDDSEEGSSSSSGGFNETIEKLSGIALQEASMGYGMTTPQPRKKIPGSARDSWSSGSDDIMFVKDPRTVSGKKKHVA QLPQSWPAAQKGKRYRNYPGEKKKFRKEMIAEKRRVRMLQRGVDLEEINMKLEQIVSNKVDLFSFPPMHSKDCSQVKRLAAIYRLRSGAQGSGKKRFVTV MRTQHTSMPSANDKVRLEKLIGETCKDENFSVVERKSASAERRIQNNPKGSGISNLERPSRIKPSRKPSNRQNNTIPPMKQGGRKAADYASQPVSFVSCG VIQSEVDAENTTMDPKEKHKAVKEKALVIESDKVGAFELHTKGFGSKMMAKMGYIEGAGLGKDGQGIAAPIEAIQRPKSLGLGVHFSNTDVEQPAKAEGQ SARKPAGPRSAQKSGARAQEKRPQPQGLGDFERHTKGFGSKMMARMGFVEGSGLGKDSQGMVNPLVAVRRPKARGLGAKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	0	1
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10041569 [exp]	1.0	0.8829
AT3G49490			unknown protein		Lus10015581 [exp]	4.5	0.8621
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	4.9	0.8592
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	4.9	0.8279
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	5.7	0.8041
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	7.0	0.7944
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	7.9	0.8158
AT1G24560			unknown protein		Lus10038257 [exp]	8.4	0.8407
AT5G11700			unknown protein		Lus10011144 [exp]	10.4	0.8590
AT4G27020			unknown protein		Lus10032644 [exp]	12.2	0.8063

Compare expression of checked genes

Lus10036327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.