Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47485 79 / 4e-19 unknown protein AT3G62650 78 / 9e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010026 [exp] 190 / 3e-59 AT3G62650 78 / 4e-17 unknown protein Lus10009157 [exp] 46 / 1e-06 AT2G47485 57 / 6e-11 unknown protein Lus10028487 [exp] 44 / 5e-06 AT2G47485 52 / 4e-09 unknown protein Lus10009156 [exp] 43 / 1e-05 AT2G47485 50 / 2e-08 unknown protein Lus10028488 [exp] 42 / 4e-05 ND 48 / 1e-07 Lus10017613 [exp] 40 / 0.0002 AT3G62650 47 / 2e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200000 [exp] 109 / 4e-31 AT2G47485 106 / 3e-30 unknown protein Potri.014G124900 [exp] 89 / 7e-23 AT3G62650 77 / 2e-18 unknown protein Potri.010G119200 [exp] 58 / 3e-11 AT2G47485 57 / 3e-11 unknown protein Potri.004G095200 [exp] 57 / 8e-11 AT2G47485 58 / 2e-11 unknown protein Potri.004G095150 [exp] 57 / 8e-11 AT2G47485 58 / 2e-11 unknown protein Potri.017G119800 [exp] 54 / 7e-10 AT2G47485 66 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036328 pacid=23174509 polypeptide=Lus10036328 locus=Lus10036328.g ID=Lus10036328.BGIv1.0 annot-version=v1.0 ATGGAAGGCATCTCTGTCACCGCTTTCAGGAAGGTTAAGCGCTACTGGAGGAGGCAGGGTTACCGCCGGATCGACGGTCCCCGGATGCAGCGGGCGAAGC TCGGCGGCGGCGAAGGAGGACGACGCCGGTCGTGGCGGATCAAGATAAAGCCGAAGCTAAAGTTCCTGAACAAGGTCGGTTCGCCGAAGAAGCTATTCAT CTGGCTTAGGGACGCCTACGTCAGGATGATGGTCGGATTCGCTAACTCCGCCGGTGGCGGGATGGTCAGCGCGTCGAGCTACGGCGGTGCCACGATTGGT GGCGACGGCGGCGCCATTTTCGGGAGGAGGGTTGTGAAGGAGTACGACGAGAAGATGATAATCGAGATCTATAAGTCGCTGGTGATGGCGCAGTCTAATC GGTTGGCGGCGGCGGCGAGGGAAGGTGCCGCCATCGCCAGTTCTGGTTCCTCCGTTGTCCAGCATAAACTTACTGCTATAGTGGAGTGA
AA sequence Show only first row Show all	>Lus10036328 pacid=23174509 polypeptide=Lus10036328 locus=Lus10036328.g ID=Lus10036328.BGIv1.0 annot-version=v1.0 MEGISVTAFRKVKRYWRRQGYRRIDGPRMQRAKLGGGEGGRRRSWRIKIKPKLKFLNKVGSPKKLFIWLRDAYVRMMVGFANSAGGGMVSASSYGGATIG GDGGAIFGRRVVKEYDEKMIIEIYKSLVMAQSNRLAAAAREGAAIASSGSSVVQHKLTAIVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47485			unknown protein		Lus10036328 [exp]	0	1
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	4.0	0.9157
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	7.1	0.8833
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10015079 [exp]	8.0	0.9008
					Lus10014008 [exp]	16.7	0.8583
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	18.8	0.9039
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	21.5	0.8417
					Lus10029087 [exp]	22.2	0.8580
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10027584 [exp]	22.4	0.8455
AT4G14615			unknown protein		Lus10021896 [exp]	24.0	0.7923
					Lus10036535 [exp]	25.2	0.9013

Compare expression of checked genes

Lus10036328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.