Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16143 831 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT3G06720 831 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G02690 771 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 762 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT1G09270 752 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT5G49310 625 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 587 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 398 / 9e-135 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 162 / 3e-47 ARM repeat superfamily protein (.1) AT5G03070 166 / 7e-45 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010028 [exp] 986 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 872 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 869 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 846 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 830 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036452 [exp] 776 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 680 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 191 / 4e-54 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 187 / 6e-53 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020400 [exp] 879 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G010900 [exp] 877 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 870 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 866 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.002G199600 [exp] 859 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 850 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 795 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 177 / 5e-49 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.002G052700 [exp] 62 / 7e-10 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.016G085200 [exp] 56 / 9e-08 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0020 [flax] [poplar] TPR PF01749 [flax] [poplar] IBB Importin beta binding domain
Representative CDS sequence Show only first row Show all	>Lus10036330 pacid=23174527 polypeptide=Lus10036330 locus=Lus10036330.g ID=Lus10036330.BGIv1.0 annot-version=v1.0 ATGTCGTTGAGGCCGGGATCGAAGACGGAGGTGCGGCGTAACAGGTACAAAGTCGCTGTCGATGCGGAGGAAGGGAGGAGAAGGAGGGAGGATAATATGG TGGAGATCCGGAAGAACAAGCGTGAAGAGAGCTTGTTGAAGAAGCGGCGGGAAGGTTTTCAGTCTCAGCAGCTTCCGCAGTCTGCTTTTGGCAGTTCGGC CGCTACTGATAGGAAGTTAGAAACTCTTCCTGCGATGGTTGCAGCTGTTTGGTCTGATGACGGGAATGCACAACTAGATGCCACCACCCAGTTTAGGAAG TTGTTGTCCATCGAACGCAGCCCGCCAATCAATGAGGTTGTACAATCTGGTGTGGTTCCCCGTTTTGTTGAGTTTCTTCCAAGGGATGATTTCCCCCAGC TTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATCGCTTCCGGGACTTCAGAAAACACAAAGGTTGTAATTGATCATGGGGCTGTACCTATCTTTGTTAA ACTCCTGGGTTCTCCTGCGGATGATGTTAGGGAACAGGCTGTTTGGGCTTTGGGTAATGTTGCTGGTGATTCTCCAAAATGCCGTGATCTTGTACTTGGA AATTCTGCATTGATGCCACTGCTTGCACAATTCAATGACCAAGCTAAGCTCTCTATGTTGAGAAATGCAACTTGGACGCTATCAAATTTTTGCAGGGGCA AGCCACAGCCTTCATTTGATCAGACAAAGCCTGCTTTGCCAGTTCTTGAACGTCTTATTCATTCCAATGACGAGGAAGTTTTGACAGATGCCTGTTGGGC TCTGTCCTACCTCTCAGATGGGACTAATGACAAAATTCAAGCTGTTATTGAGATTGGGGTGTGCCCTCGACTTGTTGAGCTTCTAATGCATCCATCTCCA ACAGTTCTCATTCCTGCTCTACGCACAGTTGGAAATATTGTGACTGGGGATGACATGCAAACTCAGTGTATGATTGACCATCAAGTGCTGTCCGTCCTTC TTAACCTGTTGAGCAATAATCATAAGAAAAGCATCAAGAAGGAAGCCTGCTGGACAATCTCCAACATCACTGCTGGAAATATTAATCAGATACAGGCTGT AATTGAAGCTGGTATAATTGGTCCTCTCGTCCAATTACTCCTCACAGCGGAGTTTGATATAAAAAAGGAGGCTGCTTGGGCGCTTTCGAATGCTACATCT GGTGGAACCCATGACCAGATCAAATTCCTGGTGAGCCAGGGTTGCATAAAGCCATTATGCGATCTCCTAGTTTGCCCCGACCCTAGAATCGTCACTGTCT GCTTGGAGGGACTGGAAAACATCCTCAAGGTCGGAGAGGCCGACAAGAACTTGGGTGTCTCCGGAAACATTAATGCTTTTGCTCAAATGATCGATGACGC CGAAGGGATAGAGAAGATTGAGAATCTTCAGAGCCACGACAACAACGATATTTATGAGAAGGCAGTTAAGCTTCTGGAGACTTACTGGTTAGAAGAAGAT GTTGATCCCATTGCTCCAGGTGACAATAATGCCCAAGCTGGATTCAACTTTGGAGGCAACGAACCTCCCGTTCCCTCCGGCGGATTCAACTTTTCTTAA
AA sequence Show only first row Show all	>Lus10036330 pacid=23174527 polypeptide=Lus10036330 locus=Lus10036330.g ID=Lus10036330.BGIv1.0 annot-version=v1.0 MSLRPGSKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGFQSQQLPQSAFGSSAATDRKLETLPAMVAAVWSDDGNAQLDATTQFRK LLSIERSPPINEVVQSGVVPRFVEFLPRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPADDVREQAVWALGNVAGDSPKCRDLVLG NSALMPLLAQFNDQAKLSMLRNATWTLSNFCRGKPQPSFDQTKPALPVLERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEIGVCPRLVELLMHPSP TVLIPALRTVGNIVTGDDMQTQCMIDHQVLSVLLNLLSNNHKKSIKKEACWTISNITAGNINQIQAVIEAGIIGPLVQLLLTAEFDIKKEAAWALSNATS GGTHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKNLGVSGNINAFAQMIDDAEGIEKIENLQSHDNNDIYEKAVKLLETYWLEED VDPIAPGDNNAQAGFNFGGNEPPVPSGGFNFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	4.9	0.8154
AT5G22280			unknown protein		Lus10034182 [exp]	4.9	0.8018
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	6.0	0.8202
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	6.1	0.8371
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	8.5	0.8117
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	8.7	0.8228
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	13.8	0.8133
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	15.0	0.8032
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	18.9	0.7771
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	22.0	0.8011

Compare expression of checked genes

Lus10036330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.