Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 446 / 1e-149 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 427 / 2e-142 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 374 / 1e-121 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT1G19940 264 / 8e-81 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 260 / 5e-79 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G64390 223 / 3e-64 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT1G22880 206 / 2e-59 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G39000 203 / 4e-58 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G39010 199 / 8e-57 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT3G43860 196 / 2e-55 ATGH9A4 glycosyl hydrolase 9A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010029 [exp] 847 / 0 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10012162 [exp] 461 / 3e-155 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 459 / 8e-155 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 407 / 3e-134 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10028619 [exp] 326 / 7e-103 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 323 / 7e-102 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10007584 [exp] 314 / 2e-101 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10014265 [exp] 264 / 4e-80 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10025965 [exp] 253 / 3e-76 AT1G75680 549 / 0.0 glycosyl hydrolase 9B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 454 / 5e-153 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 452 / 3e-152 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.010G177300 [exp] 415 / 1e-137 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.008G079500 [exp] 413 / 9e-137 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.005G188500 [exp] 318 / 8e-100 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G115400 [exp] 255 / 2e-77 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 243 / 8e-73 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 242 / 2e-72 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.007G071200 [exp] 231 / 4e-67 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G092200 [exp] 228 / 3e-66 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10036331 pacid=23174456 polypeptide=Lus10036331 locus=Lus10036331.g ID=Lus10036331.BGIv1.0 annot-version=v1.0 ATGTCGGGGATAAGAAACATATGGGGAGGCTCGTTCGAAGTAATGCCTGACGGCAACGGTGGCGATGAAGACAGACGGATGGAAGAGGTTAAACAACGTT GGCTTCTCCAGCCGACGGACGGCGGCTGGGACGACCGTCGGAGGACCAGGAGAAGGAATAATATCCCTACTGGGAGATTGCTGAAGCTTGTTTTGATGGC CATTGGTTTTATAAGTATCATAACGCTTATTTCCTTAGCGGCAGCCGGCCAATTCCGCCGCCGCCACGTCACTCCGCCGGTAGTGGACAATTACACCGCC GCCCTTGGTTTAGCTCTAAAGTTCTTCAACGCACAGAGATCTGGACGGCTTCCCAAAGGAAACAACGTGACCTGGAGGGGCAACTCTTGCCTGAGCGACC AACCAGCCGGAGGCTACTACGATGCCGGCAGCGCCATCAAGTTCAGTTTCCCGACGTCTTTCGCGATGACGCTGCTGAGCTGGAGCGTGATAGAGTACCG TGATAAGTACGAAGCAATGGGGGAGCTTGACCATGTCAAGTCAGTTATAAGATGGGGAACTGATTACCTTCTTCAGACTTTCAACTCTTCCGCTCGACGA ATTGATCATATTATCGCTCAGCGCCTCGTTGTAGGCTGCTGCATAGGAGGGTATTTGTTACACCATTGGATATCGGAGTGTGCACCAATAAGTCGGAGGA GACAAAGACAGCCACTGTTGGGTTCGACCGGAGGACATACGCTATACCCGCAAGGCGACCAAGTGCGCTACCCCCGCCCGGCGACCAAGTGCTACACGTG CCCTGCCTTGGCTGCAGAAATGGCGGCTGCGTTAGCCTCTGCTTCCATAGTCTTCAAAGATCAAGGCAGTAAATACTCCAAATCACTGGTCCACGGAGCA GAAACTCTGTTTCGGTTCGCCACCGGAGATCAGGGCCTGAAATATGCCGGCAACCCCGACCAACCCTCCAAGTCCTACAATTCATCAGGGTTCTGGGACG AGGTAGTGTGGGGCGGTGCTTGGTTGTACTGCGCCACCGGCAACGTCTCCTATCTCAACCTCGTCACCTCCCCTGACTTAGCCGCAGAGAAAGACAACAA ACCTCACCCATTCTGGAGAGGACAAGACCGCCAAGTATTCAGCTGGAACAACAAACACTTGGGAGCTCAGCTACTCCTAACCAGGATAAGGATGTTCTTG TCCAGCTCCTATCCTTACGAAACCCTCCTATTGAAGTACCATCGTAACCTGGAGGACATCATCTGTTCCTACATGTCCTACACTCCATCCAGCTTCAGAA GAACAAACGGAGGATTGATCCTACTCAACGGCGTCAAAACGCCCAAGCCGATTCACTCCGCCGTTAACGCAGCCTTCTTGGCCGCTTTGTATGGAGACTA CTTGGCCACCGGGTCCACGTCCGGGTGGCAGTGCGGAGACGGCCGCCCCGTCGAGGATCTTCGCACATTCGCAGCCAACCAGGTGAACTACATTCTGGGC AAGAATCCGAAAGGGATGAGCTACGTCGTTGGGTACAGGAAGAAGTTCCCGCGACACGTTCATCACAGGGGAGCTTCGATTGATCATCGCAAGGGTGACA ATGGTGTGAAGTATGGGTGTGAGGGCGGGCGGAAATGGAGGGATATCCCAAAGCCGGACCCACACATTATTGTGGGAGCGATGGTGGGTGGTCCGTACGG TTTGAACGACAAGTTTAAGGATGTTCGAGCGAATTATAGCTACACGGAGCCGAGTATCGTTGGGAATGCTGGTCTTGTTGCGTCGTTAGTGGCTTTGTCA TCATCGCTGGAGGGTCATGAGAGGTTTAGGAAAGTTGATGTGAATACTATGTTCTCTGCTGTGCCTCCTTTGTATAATCATTAA
AA sequence Show only first row Show all	>Lus10036331 pacid=23174456 polypeptide=Lus10036331 locus=Lus10036331.g ID=Lus10036331.BGIv1.0 annot-version=v1.0 MSGIRNIWGGSFEVMPDGNGGDEDRRMEEVKQRWLLQPTDGGWDDRRRTRRRNNIPTGRLLKLVLMAIGFISIITLISLAAAGQFRRRHVTPPVVDNYTA ALGLALKFFNAQRSGRLPKGNNVTWRGNSCLSDQPAGGYYDAGSAIKFSFPTSFAMTLLSWSVIEYRDKYEAMGELDHVKSVIRWGTDYLLQTFNSSARR IDHIIAQRLVVGCCIGGYLLHHWISECAPISRRRQRQPLLGSTGGHTLYPQGDQVRYPRPATKCYTCPALAAEMAAALASASIVFKDQGSKYSKSLVHGA ETLFRFATGDQGLKYAGNPDQPSKSYNSSGFWDEVVWGGAWLYCATGNVSYLNLVTSPDLAAEKDNKPHPFWRGQDRQVFSWNNKHLGAQLLLTRIRMFL SSSYPYETLLLKYHRNLEDIICSYMSYTPSSFRRTNGGLILLNGVKTPKPIHSAVNAAFLAALYGDYLATGSTSGWQCGDGRPVEDLRTFAANQVNYILG KNPKGMSYVVGYRKKFPRHVHHRGASIDHRKGDNGVKYGCEGGRKWRDIPKPDPHIIVGAMVGGPYGLNDKFKDVRANYSYTEPSIVGNAGLVASLVALS SSLEGHERFRKVDVNTMFSAVPPLYNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10036331 [exp]	0	1
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	6.2	1.0000
					Lus10004351 [exp]	6.3	1.0000
					Lus10001326 [exp]	6.3	1.0000
					Lus10033373 [exp]	9.9	1.0000
					Lus10027374 [exp]	10.7	1.0000
					Lus10026755 [exp]	12.6	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	14.7	1.0000
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10037776 [exp]	14.8	1.0000
					Lus10009206 [exp]	15.9	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	16.5	1.0000

Compare expression of checked genes

Lus10036331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.