Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 265 / 3e-87 Protein of unknown function (DUF1624) AT5G27730 236 / 1e-74 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010030 [exp] 448 / 2e-157 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10039223 [exp] 234 / 1e-74 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10027468 [exp] 223 / 5e-70 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10020653 [exp] 216 / 8e-67 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 192 / 1e-57 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 191 / 4e-57 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10019798 [exp] 178 / 3e-53 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10014112 [exp] 175 / 1e-51 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 154 / 1e-45 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G123800 [exp] 345 / 5e-117 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 283 / 7e-93 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 271 / 3e-88 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 260 / 2e-84 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 248 / 8e-80 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.013G016900 [exp] 237 / 5e-75 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.006G122500 [exp] 233 / 4e-73 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 215 / 2e-66 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036333 pacid=23174384 polypeptide=Lus10036333 locus=Lus10036333.g ID=Lus10036333.BGIv1.0 annot-version=v1.0 ATGATATTAGTTGACGACGCCGGAGGAGCGTTCCCGTCGATTAACCACTCTCCGTGGTTTGGAGTCACGCTGGCCGACTTCGTGATGCCGTTTTTCCTGT TCGGCGTAGGTGTTTCGACTGGTTTAGCGTTCAAGAGAGTACCAAACAAAGTAGAGGCAACGAAGAAAGCTGTTCTAAGAACAATTAAGCTGTTTGTTCT TGGAGTGTTGCTGCAAGGAGGAGATTTCCATGGTCGTCATGATCTGACATACGGAGTCGATGTGGGCAAGATACGGTGGCTAGGCGTGCTGCAGGTGATT CTACTCGGTCAGCTAGGTTTGATGGAATACCTTTACCAGAAAGCCATTCTCGTGTTACTTGTACTACACAATCTAAGATGTCATGCCTACCTGCAGAGAA TATCTATAGGTTATCTGTTTGCATCACTGTCAGAGATTTGGCTTGTGGATAACAGTGTGGTCAACTCAGTGATGACATTTGTGAAGAAATATTATGTTCA ATGGATGGTGCCATTCATCATATGTGATATCTACATGTGCTTGCTGTATGGCCTCTTTGTTCCAGATTGGAGATACGAGCTTCAAAGTGTGAATTCTGTA GGCAATGGATCATATACTCTAACGGTGCCTTGTGGAGTAAGGGGCAGTCTTGATCCTCCTTGTAATGCAGTTGGCTTGGTTGATCGAGTTTTCCTTGGGT TAGAACATCTTTACCAGCATCCTGTATATACTAGGACAGAGCAATGCAGTGTTAATTCTCCTGACTACGGGCCTCTGCCACCAAATGCTCCAAACTGGTG TCGTGCTCCATTTGACCCTGAGGGCATTCTGAGGTTAGAACACTGGATAGCCTTTGATGTCCTGTCGTCACTCTACGATACCCGAGCAAGAAGTTCACAT TGA
AA sequence Show only first row Show all	>Lus10036333 pacid=23174384 polypeptide=Lus10036333 locus=Lus10036333.g ID=Lus10036333.BGIv1.0 annot-version=v1.0 MILVDDAGGAFPSINHSPWFGVTLADFVMPFFLFGVGVSTGLAFKRVPNKVEATKKAVLRTIKLFVLGVLLQGGDFHGRHDLTYGVDVGKIRWLGVLQVI LLGQLGLMEYLYQKAILVLLVLHNLRCHAYLQRISIGYLFASLSEIWLVDNSVVNSVMTFVKKYYVQWMVPFIICDIYMCLLYGLFVPDWRYELQSVNSV GNGSYTLTVPCGVRGSLDPPCNAVGLVDRVFLGLEHLYQHPVYTRTEQCSVNSPDYGPLPPNAPNWCRAPFDPEGILRLEHWIAFDVLSSLYDTRARSSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	0	1
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	1.7	0.9200
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	2.4	0.8801
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	3.2	0.8889
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	3.5	0.8709
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	6.0	0.8597
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	7.1	0.8619
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	11.0	0.8532
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	12.2	0.8262
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10014247 [exp]	13.4	0.7702
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	13.4	0.8421

Compare expression of checked genes

Lus10036333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.