Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02660 572 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G62590 488 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1) AT3G61680 377 / 1e-121 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 49 / 7e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 47 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 47 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 45 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G30370 43 / 0.0008 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010031 [exp] 1088 / 0 AT1G02660 702 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009811 [exp] 362 / 4e-115 AT3G61680 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040915 [exp] 283 / 5e-87 AT3G61680 415 / 1e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 44 / 0.0005 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 44 / 0.0005 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 44 / 0.0005 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197900 [exp] 655 / 0 AT1G02660 561 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G097200 [exp] 357 / 3e-113 AT3G61680 580 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G169600 [exp] 353 / 1e-111 AT3G61680 576 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G290600 [exp] 46 / 7e-05 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.014G027800 [exp] 45 / 0.0002 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 45 / 0.0002 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 42 / 0.0009 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10036334 pacid=23174463 polypeptide=Lus10036334 locus=Lus10036334.g ID=Lus10036334.BGIv1.0 annot-version=v1.0 ATGGACGGATTGCGCTTGAACACTGGGATCCATGGAGTTGCGCCGTCGATCTCAGTCGCCGGATCCGTAGGATTGGATTTCCGGCCCAACGCCACTTATC TGAGCAGGGATCATAAATCTACATCCCCGGCGGCTTCTTCCTCTTGTTCTTCGTCTTCTCCGCCGCCGTTCAGGTTCTCGTTCCGGTACCCGCTTCAGTC GTGGTGGCCTGGTCAGAGGCAAAACGCGGCGGTAGCCACTGGAGGCGAGGAATCCGTCCTCGTCAATAATGCCGAGGCTGGAAACGGCGGGATGGTGGAA GGGCGGGATCAGAATTGGGTGATGAAGATTTTGCACGTTAGGTCTCTTTGGAAGGACGAGGGATCGGATTCGAAGTCTGAAGAGGCTGATGTCGACAAGA AATCCGATGATGAGGAAGTGGATGATAAGGTGTGCTGCGTTGAGGAGAATGGAGAAGACAAGATTGAATTCGACAGGGACTCCTTCTCCAGATTGCTCAG GAAAGCATCACTCGCTGATGCCAAGTTGTATGCTCAGATGTCGTATTTGGGGAACTTGGCTTACTGTATACCTAAGATCAAGCCAGGGAATCTGATGAAA TATGGAACGTTGAAGATGGTAACTTCATCTGTTGAGAAGCGAGAGCTGGCCAAGAAAGCTCATATGCCAACTGAATCCCAGGAGCAAGAAGAAGCCCAGC CAAAAGAGATACTAAAGGAGGAACCAGAAAAGGTTGACGGCCAGAAGAATCAAATTAACGCCTCTACTGCTTATCAAATAGCTGCCTCTGCTGCTTCCTA TCTACACTCGCAAGCAAAATGCATTCTTCCTTTCGATTCCTCCAAGGTTGAAATGAACGAAGATTCGACCGACGGGGCTTCTAAGAAGGATTCCCATGCT TCTCTTATGGCGACTACCAACTCGGTGACAGCTGTGGTTGCCGCAAAAGAAGAAATGAAACAAGCTGTTGCAGATGATTTGAGTTCAACTTGTTCATCCC CTTGTGAGTGGTTCATATGTGATGATGATCAGCGCACAAGATATGTTGTGATTCAGGGATCCGAGTCACTGGAATCCTGGCAAGCGAATCTTCTGTTCGA GCCTATCGAGTTTGAAGGATTGGGTGTGCCTGTTCATAGAGGAATCTACGAAGCTGCAAAAGGAATCTACGAGCAAATGTTGCCCGAAATCCGAGCCCAT TTAAAATCATACGGCAACCGAGCAACCTTCCGCTTCACTGGCCATTCCCTAGGCGGAAGCTTGTCAGTGCTCATAAACCTAATGTTGCTAGTTAGAGATG AAGTGCCAGTTTCCTCTTTGCTTCCGGTTATAACATTCGGTTCGCCATCCATCATGTGCGGTGGAGACCAGCTCCTTCGTAAGCTCGGCCTGTCGCGGAA TCATGTGCAGGCAATCACGATGCACCGAGACATCGTTCCCCGGGCTTTCTCCTGCAGTTACCCTAGCCATGTTGCAGAGCTTTTGAAAGCTGTGAATTCG AACTTCCGGAACCATCAGTGTCTCAATAATCAGAGTATCTTATACGCACCCATGGGAGAGCTTGTGATACTTCAACCGGACTCAAAATTCTCGCCTCAGC ACGATCTCTTACCATCAGGCAGCGGTCTGTTCTTCCTCAGCTCCAACGGCAATGACGATAATGCAGACAAGTTGCTTCGAGCTGCACAGTCGACATTCAT GAACTCGCCACACCCGCTTGAGATTCTAAGCGACCGCTCAGCTTACGGCTCCGAAGGTGCGATCCAAAGGGATCACGACATGCACTCGTACTTGAAATCG GTACGAAACGTGATACGCCTGGAGATGAACCGGACAAGGAAAGCTAGACGTGAGCACCGACGGAAGTTCTGGTGGTCGAGGTTGGCAATGACCGATGTGT TGGTCGTCGGGAGGGGTTTGCCGACGTTGAGCAGGACCGGGTCGGTTCGGATGAATTTTTCGGGTGCGATACAGACTGGAAGAGAGTCGATTAAGAGGTT TAGTAGAGTGGTGGCTTCCCAGCACATGCATTTGTTCGTTGTGCTGTTGCTCCCTGCACGTATGATTCTCTTAGGTGTATACAACGTGATGGGTTCCCAT TAA
AA sequence Show only first row Show all	>Lus10036334 pacid=23174463 polypeptide=Lus10036334 locus=Lus10036334.g ID=Lus10036334.BGIv1.0 annot-version=v1.0 MDGLRLNTGIHGVAPSISVAGSVGLDFRPNATYLSRDHKSTSPAASSSCSSSSPPPFRFSFRYPLQSWWPGQRQNAAVATGGEESVLVNNAEAGNGGMVE GRDQNWVMKILHVRSLWKDEGSDSKSEEADVDKKSDDEEVDDKVCCVEENGEDKIEFDRDSFSRLLRKASLADAKLYAQMSYLGNLAYCIPKIKPGNLMK YGTLKMVTSSVEKRELAKKAHMPTESQEQEEAQPKEILKEEPEKVDGQKNQINASTAYQIAASAASYLHSQAKCILPFDSSKVEMNEDSTDGASKKDSHA SLMATTNSVTAVVAAKEEMKQAVADDLSSTCSSPCEWFICDDDQRTRYVVIQGSESLESWQANLLFEPIEFEGLGVPVHRGIYEAAKGIYEQMLPEIRAH LKSYGNRATFRFTGHSLGGSLSVLINLMLLVRDEVPVSSLLPVITFGSPSIMCGGDQLLRKLGLSRNHVQAITMHRDIVPRAFSCSYPSHVAELLKAVNS NFRNHQCLNNQSILYAPMGELVILQPDSKFSPQHDLLPSGSGLFFLSSNGNDDNADKLLRAAQSTFMNSPHPLEILSDRSAYGSEGAIQRDHDMHSYLKS VRNVIRLEMNRTRKARREHRRKFWWSRLAMTDVLVVGRGLPTLSRTGSVRMNFSGAIQTGRESIKRFSRVVASQHMHLFVVLLLPARMILLGVYNVMGSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10036334 [exp]	0	1
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	3.3	0.8680
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	7.9	0.8445
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	9.5	0.8426
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	11.1	0.8362
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	17.1	0.8168
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	17.7	0.8204
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	17.9	0.8318
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	21.2	0.8089
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	24.5	0.8136
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	26.8	0.7711

Compare expression of checked genes

Lus10036334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.