Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02100 579 / 0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G47440 567 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62570 515 / 3e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02650 474 / 7e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 79 / 3e-15 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 66 / 4e-11 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010272 [exp] 842 / 0 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10002438 [exp] 640 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 81 / 1e-15 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019041 [exp] 77 / 1e-14 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 77 / 1e-14 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031042 [exp] 50 / 5e-06 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019560 [exp] 44 / 3e-05 ND 39 / 3e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197300 [exp] 694 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.014G122300 [exp] 689 / 0 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 79 / 4e-15 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.009G050200 [exp] 76 / 3e-14 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 71 / 2e-12 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.006G047700 [exp] 69 / 8e-12 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10036335 pacid=23174592 polypeptide=Lus10036335 locus=Lus10036335.g ID=Lus10036335.BGIv1.0 annot-version=v1.0 ATGGCCGCCACGTCTCCTCCTCCCCACGGCGGCCCTGAGAGAAAGCACTGGTGGCTCACCAATCGCAAGATTGTCGATAAGTATGTCAAGGACGCCAGGA GTTTGATAGCCAGCCAAGAGCAAGGGGACGTGGCTTCCTCATTGAACCTGCTCGATGCAGCTCTATCTCTCTCTCCGCGATTCGAGCCTGCGCTTGAGCT CAAGGCTAAGTCGTTGCTCTACCTCCGTAGATTCAAGGACGTCGCCGATTTGCTCCAGGACTATATCCCTAGCTTCAAAATCGCCTCCGATGAATCATCA TCCATTACTTCCTCTTCGTCTTCGTCTTCTTTATCTTCTTCCTCGTCGGATGTTTCCTCCCGAGCTAAGCTTCTACAGTCCGATAATTCGTCGTCCGACT TCTCCGAGGGCCGAGACCCGAGCTTCAAGTGCTTCTCTGTTTCTGATTTGAAGAAGAAAGTAATGGCTGGACTCTGTAAAAACTGCGACAAAGAAGGGCA ATGGAGGTATTTGATTTTGGGCCAAGCCTGTTGCCATTTGGGCCTAATGGAGGATGCAATGGTCCTTCTCCAGACCGGGAAACGCCTCTCCACCGCCGCA TTCCGTCGCCAGAGCATCTCATGGTCCGAGGACAGCTTCTCCCTCTCCAACTTCCCTATCTCCGTCGACTCATCCGCACCACCAACTCCGCCGCGGAACA TAACCGAAACGGAAAACATAACTCATCTACTCGCACACATCAAGCTCCTCCTCCGACGCCGCGCGGCCGCAATCGCTGCATTAGACGCTGGCCTTTACGC GGAGACAATCCGGCACTTCTCGAAGATCGTGGACGGCAGGAGAGGAGCTCCGCAAGGATTCCTCGCTGAATGCTATATGCACAGGGCGTTCGCGTACAAA TTTGCTGGCCGAATTGCAGAAGCAATTGCGGATTGCAACAAGACTCTGGCGTTAGATCCGTCTTCGATCCAAGCACTGGAGACCAGAGCTTCGCTTCTTG AAACGATCCGGTGCTTGCCGGACAGTCTCCACGATCTGGAACACCTGAAGCTTCTATACAATTCGATCCTCCGTGACAGGAAGCTTCCAGGACCGGCCTG GAAGCGGCAGTACGTTACGTATAGAGATATTCCAGGGAAGCTTTGTGCCTTGAGCACCAAGATTCAGGCGCTGAAACAGAGAGTCGCAGCCGGTGAGACT GGGAACGTCGATTACTACGGTTTGATCGGATTGAGGAGGGGATGCTCCAGATCCGAGCTGGAGAGAGCTCATCTGTTGCTCGTCCTCAGGCATAAACCGG ATAAGGCGACGAACTTTATCGATCGATCTGAGATTGCGGATCTTCGAGATCTGGATTCGATCAAGGATCGCGCAAAGATGTCTGCGTTGTTGCTCTACAG ATTGATCCAGAGAGGCTACTCCACTGTGATGAGGAATATTCTTGACGAGGAGGCCGCCGAGAAGCAGAGAAAGAGAGATGCCGCCAATGCTGCCACCGCC GCTGCAGCTGCTGCGGCAGCGGCGGGGCGGCGGCGGCGGCTGCTGTACATGCTGCCGTAG
AA sequence Show only first row Show all	>Lus10036335 pacid=23174592 polypeptide=Lus10036335 locus=Lus10036335.g ID=Lus10036335.BGIv1.0 annot-version=v1.0 MAATSPPPHGGPERKHWWLTNRKIVDKYVKDARSLIASQEQGDVASSLNLLDAALSLSPRFEPALELKAKSLLYLRRFKDVADLLQDYIPSFKIASDESS SITSSSSSSSLSSSSSDVSSRAKLLQSDNSSSDFSEGRDPSFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLILGQACCHLGLMEDAMVLLQTGKRLSTAA FRRQSISWSEDSFSLSNFPISVDSSAPPTPPRNITETENITHLLAHIKLLLRRRAAAIAALDAGLYAETIRHFSKIVDGRRGAPQGFLAECYMHRAFAYK FAGRIAEAIADCNKTLALDPSSIQALETRASLLETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRQYVTYRDIPGKLCALSTKIQALKQRVAAGET GNVDYYGLIGLRRGCSRSELERAHLLLVLRHKPDKATNFIDRSEIADLRDLDSIKDRAKMSALLLYRLIQRGYSTVMRNILDEEAAEKQRKRDAANAATA AAAAAAAAGRRRRLLYMLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	0	1
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	1.0	0.9291
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	2.4	0.9085
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10043287 [exp]	3.0	0.8939
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	3.5	0.9045
AT3G07210			unknown protein		Lus10025908 [exp]	3.5	0.9073
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	4.7	0.8897
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	5.3	0.8983
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	5.5	0.8929
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	5.5	0.9025
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	6.3	0.8963

Compare expression of checked genes

Lus10036335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.