Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47470 541 / 0 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 142 / 2e-38 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 135 / 1e-35 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT5G60640 104 / 2e-24 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G77510 98 / 4e-22 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 97 / 7e-22 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G54960 90 / 2e-19 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G35620 80 / 3e-16 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G07960 71 / 1e-14 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT1G52260 75 / 2e-14 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010274 [exp] 689 / 0 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10020691 [exp] 486 / 3e-173 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10029854 [exp] 380 / 2e-131 AT2G47470 375 / 5e-130 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 141 / 7e-38 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 141 / 9e-38 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 131 / 2e-34 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029681 [exp] 101 / 3e-23 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 100 / 8e-23 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 96 / 2e-21 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122800 [exp] 577 / 0 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 571 / 0 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 141 / 3e-38 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.009G013600 [exp] 100 / 5e-23 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G082100 [exp] 97 / 8e-22 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 92 / 3e-20 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 84 / 8e-18 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 84 / 9e-18 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.009G004500 [exp] 75 / 4e-16 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.008G040100 [exp] 72 / 7e-14 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07749 [flax] [poplar] ERp29 Endoplasmic reticulum protein ERp29, C-terminal domain CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10036337 pacid=23174362 polypeptide=Lus10036337 locus=Lus10036337.g ID=Lus10036337.BGIv1.0 annot-version=v1.0 ATGGAGAATTACTCTCGGCGGATCTGGTTCGCGATCGGAGCGTTGACCTTGTTGGCTGTATCAGCTGCTGCGGACGACGTCCTTGTGTTAACCGAAGACA ACTTCGACAAAGAGGTCGGCCAGGACAGAGACGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGACACTGTAAGAAGCTTGCTCCCGAGTATGAGAAGCT TGGAGCAAGCTTTAAGAAGGCGAAGTCCATTTTGATCGCCAAGGTGGACTGTGATGAACACAAGAGCGTATGTTCCAAGTATGGTGTTTCTGGATACCCA ACGATTCAGTGGTTCCCCAAAGGATCTCTAGAGCCTAAAAAATATGAAGGTCCACGCACTGCAGAAGCCCTCACCGAGTATGTTAATAGTGAAGCAGGAA CCAACGTGAAGATTGCTACTGCTCCATCTTACGTAACAGTATTGACAGCAGAGACATTCAATGAAGTCGTCTTGGATGATTCTAAAGATGTCTTGGTTGA GTTTTATGCACCTTGGTGTGGTCACTGCAAAACCCTTGCCCCTACCTATGAAAAAGTAGCCACTGCCTTCAAGTCGGAAGACGGTGTGGTGATTGCCAAT CTTGATGCCGACAAATACAAGGATTTAGCGGAGAAGTACGGAGTAAGTGGGTTCCCTACTTTGAAATTCTTCCCCAAAGGAAACAAGGCTGGGGAGGATT ATGATGGTGGAAGAGACTTGGAAGACTTTGTCACTTTCATCAACGAGAAGTCCGGTACCAGCCGTGACGGAAAGGGACAACTTACCTCCAAAGCTGGTAT AGTTGAAAGTCTTGATGCCTTGGTGAAAGACTTTGTAGCTGCTGGTAGCAAAGACGAAAAGAAAGCAATCTATTCCCGTATGGAAGAAGAAGTTGCTACA TTAAACGGCCCCCCTGCAAGGTATGGAAAGATCTACTTGAAAGCTGCAAAGAGCAGCATGGAGAAAGGTGATGGTTATGCCAAGAAGGAAACCGAGAGGC TGCAACGCATCCTCGAAAAGTCTATTAGCCCAGCTAAAGCTGATGAGTTCACCTTGAAGAAGAATATCCTTGTAGCATTTGCTTGA
AA sequence Show only first row Show all	>Lus10036337 pacid=23174362 polypeptide=Lus10036337 locus=Lus10036337.g ID=Lus10036337.BGIv1.0 annot-version=v1.0 MENYSRRIWFAIGALTLLAVSAAADDVLVLTEDNFDKEVGQDRDALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSILIAKVDCDEHKSVCSKYGVSGYP TIQWFPKGSLEPKKYEGPRTAEALTEYVNSEAGTNVKIATAPSYVTVLTAETFNEVVLDDSKDVLVEFYAPWCGHCKTLAPTYEKVATAFKSEDGVVIAN LDADKYKDLAEKYGVSGFPTLKFFPKGNKAGEDYDGGRDLEDFVTFINEKSGTSRDGKGQLTSKAGIVESLDALVKDFVAAGSKDEKKAIYSRMEEEVAT LNGPPARYGKIYLKAAKSSMEKGDGYAKKETERLQRILEKSISPAKADEFTLKKNILVAFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	0	1
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	2.0	0.9206
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	5.1	0.9201
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	5.5	0.9199
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	5.7	0.9051
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	6.5	0.8890
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	7.0	0.9065
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	8.3	0.8729
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	8.5	0.9032
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	8.5	0.9147
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10019284 [exp]	8.9	0.8768

Compare expression of checked genes

Lus10036337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.