Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46900 560 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010275 [exp] 988 / 0 AT2G46900 635 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109500 [exp] 689 / 0 AT2G46900 574 / 0.0 unknown protein Potri.002G183500 [exp] 681 / 0 AT2G46900 559 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04910 [flax] [poplar] Tcf25 Transcriptional repressor TCF25
Representative CDS sequence Show only first row Show all	>Lus10036338 pacid=23174442 polypeptide=Lus10036338 locus=Lus10036338.g ID=Lus10036338.BGIv1.0 annot-version=v1.0 ATGTCTGGTAGGTTACTAAAGAAAGTCCTGAAAGAGAAAGAGCAATTCCAGCTCCCGCAGCATGTCGAGGAAGACGACGAAGAAGAAGAAACAGACGGCG GCGGCGGATGCTCAGGTCCAGCAATCAACCCATTCGACCTTCTCAACGACGGCCAGGATGGCTCCGACCAGGAGAGTGAGCCGGAAGCTATTGATGAAAT CAAGAGCGAGGAGAAACCAAAGCCGCCTGTGAAATCTAATCCGAAATCAAAGAAGAAGAAAAAGAAGAAAACCAAATCAAGTAATGTGGGCAAAGTTGAA GAAACTTTAGAAGAAGCATTGGAGATGCTGTCCATGGCTGCTGCTAAACCTTCGGCAGCACCTGAACCTGATGGAGGAGTGGAAAGCAAGAATTCAAAGA AGATCTGCAAAGAAACTTCGAAACGACATCAAGCGCAGTCGATATTGCTAGTGGATCCTAAGCATTTGAATCCGGACAATGAGCTGCGTAGGATATTTGG ATCGAAGGTTGTGAAATCTATTGAGAAGGACAGTCAAGCTAACAGTTCTAGGCAGGTTCGCGGTGGTGCTGGTAGGCGTGGGAACCATCATACGAGGAAG ACTGTCCTGGTTTCGCCTTCTGAACATTGGCGTCGCTGGGATGGTTCCTTAACCATGGAGTTTCTGGAATCAAAGGAAGGACTTAACTACTTCAGATACA TGTACTCATCTTCCTATAGCCAAGCTCAACGATCATTCGAAGCCGCTAAAGCAATTCACGACCTAAACGGGATAGCGAGCATTCTCGTCCACTACCCGTA TCACCTAGACTCACTCATGACGATGGCTGACTATTTCAAGTTTGTGGGCGAACACCAAATGTCAGCGGACGCGATCGGCAAGTGTTTGTACGCGCTGGAA TGCGCCTGGCATCCCATGTTCACTCCCTTCCAAGGGAACTGCCAGTTGAAGATAAGCCACGAGACCAACAAGCCGATCTTCACCATCCTTTTCTCGCACA TGAGAAACCTCGACAGACGAGGCTGCCATCGATCGGCCCTCGAAGTTTGCAAGCTGTTGCTTTCTCTGGATATCGACGACCCGACCGGTTCCATATTCTG CATCGACTATTTTGCTCTAAGGGCCATGGAGTACGCGTGGCTGGAGCAGTTCTCCGAAGAGTATATCTGTGATAACTCGTTGTGGCTGTTTCCAAATTTC TCGTACTCTCTTGCGATTTGTCGGATTTACTTAGAGCAGGAGGAATCCTCGGCGAGTGGTGAAAAAGCTAGTTCTAGCGATCTGATGAAGCAGGCTCTGA TGCTTCACCCTTCAACGGTTAAGAAACTAGTCCCCAAGGTTCCTTTGAAGGATTTGTCGTGGACGGATATAGTGAATCATTCGTTTTTCAAATCGGAGAA AGCAGGATCTCCTTCATTGGATCATCTGATCAATTTGTACGTGGAGAGAAGTTATCTGATATGGAGGCTTCCGGATATCCAAAAGTTGCTGAAGGACACA GCTTTTCAAGTTATAGAAACTCTTGATCATGACAGCAGTGAAGCCAACGACTGGGCCTGTGTCAGAAAAGAAGCTTTCAGCTCTGATAAAAACGACTATG ACTACCTGATGGTATCAGATTTCTCCGACACGGTGGCAACTCTTCCTCCCGAGAACTTGCAAGATTTAATGGTGGATCCAAGGATGAGGCCGGCTGATCA AAATGACGGCCGGCTAGTCAATCAAGTTGCCGATGGCCTTCCTGCTCCACGGGATGTAGCTAACCGAAATGCAATTGCAGTCCTGATTGAATCAATACTG CCGTGGGCTTATTACGGAGATGCTGAACATGGCGAAGCTAATAATGAGGATCAAGTTGGCCCGGACAATGAAGATTGA
AA sequence Show only first row Show all	>Lus10036338 pacid=23174442 polypeptide=Lus10036338 locus=Lus10036338.g ID=Lus10036338.BGIv1.0 annot-version=v1.0 MSGRLLKKVLKEKEQFQLPQHVEEDDEEEETDGGGGCSGPAINPFDLLNDGQDGSDQESEPEAIDEIKSEEKPKPPVKSNPKSKKKKKKKTKSSNVGKVE ETLEEALEMLSMAAAKPSAAPEPDGGVESKNSKKICKETSKRHQAQSILLVDPKHLNPDNELRRIFGSKVVKSIEKDSQANSSRQVRGGAGRRGNHHTRK TVLVSPSEHWRRWDGSLTMEFLESKEGLNYFRYMYSSSYSQAQRSFEAAKAIHDLNGIASILVHYPYHLDSLMTMADYFKFVGEHQMSADAIGKCLYALE CAWHPMFTPFQGNCQLKISHETNKPIFTILFSHMRNLDRRGCHRSALEVCKLLLSLDIDDPTGSIFCIDYFALRAMEYAWLEQFSEEYICDNSLWLFPNF SYSLAICRIYLEQEESSASGEKASSSDLMKQALMLHPSTVKKLVPKVPLKDLSWTDIVNHSFFKSEKAGSPSLDHLINLYVERSYLIWRLPDIQKLLKDT AFQVIETLDHDSSEANDWACVRKEAFSSDKNDYDYLMVSDFSDTVATLPPENLQDLMVDPRMRPADQNDGRLVNQVADGLPAPRDVANRNAIAVLIESIL PWAYYGDAEHGEANNEDQVGPDNED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46900			unknown protein		Lus10036338 [exp]	0	1
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	5.2	0.8721
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	8.8	0.8600
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	10.5	0.8473
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	10.8	0.8554
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	11.0	0.8433
AT3G05510			Phospholipid/glycerol acyltran...		Lus10020650 [exp]	17.8	0.8485
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	20.7	0.7973
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	22.0	0.8197
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10018128 [exp]	22.4	0.7881
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	27.0	0.8100

Compare expression of checked genes

Lus10036338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.