Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62000 330 / 4e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 299 / 6e-102 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26220 136 / 8e-39 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 124 / 6e-34 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67990 120 / 1e-32 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G67980 116 / 3e-31 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G24735 112 / 8e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010276 [exp] 346 / 8e-121 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10014074 [exp] 123 / 1e-33 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 123 / 1e-33 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 120 / 2e-32 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 120 / 2e-32 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 122 / 6e-32 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034584 [exp] 96 / 2e-23 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10021804 [exp] 64 / 6e-12 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10012913 [exp] 0 / 1 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183600 [exp] 346 / 2e-120 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G099800 [exp] 129 / 8e-36 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 128 / 2e-35 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G136600 [exp] 127 / 2e-35 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.018G070300 [exp] 120 / 9e-33 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104400 [exp] 113 / 4e-30 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036339 pacid=23174541 polypeptide=Lus10036339 locus=Lus10036339.g ID=Lus10036339.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGAACGGAGTAGCTTACCGTTGTCTCGCTGTAGCTACTGCGACGCCTGCAATTTCAAGCGCGAGATGCTGTTCCTCTAAAGCTTGGAACT CGATTCGTAAGGTCAGTAATCTCCGCTGCTCCTCTTTCAAGAACAATCCATCCTCCACCGACGTGGTAGTCGTGGCGGAGGACGAGAAGTACGGAAACAA ACAGATCATTAGCCTCACTCCTCGCCTTTACGACTACATCCTCTCCAACGTCCGAGAACCGGAGATCATGCGGCAACTACGAGAGGAGACCGCCGGGATG CGAGGGAGCCAAATGCAGGTGTCTCCTGATCAGGCCCAGCTGCTTGCTATGCTGGTTCAGTTGCTTGGTGCTCAGAGATGCATTGAAGTAGGCGTCTACA CTGGATATTCATCGCTGGCTGTTGCTCTGGTATTACCGGAATTCGGCCAATTGATTGCTTGTGAAAGGGATGCAAATTCTCTTGAAGTTGCTAATAGGTT CTACAAAAGAGCTGGCGTTGATCACAAGGTGATTGCCAAGCATGGAATGGCAGCAGAGATTCTGAACTCTCTGATTCAGAATGGCGAATCCGGCAGTTAT GATTTTGCGTTCATTGATGCGGAGAAGAGAATGAACCACGAGTATTTCGAACTGCTGCTGAAACTGGTGAAGGTTGGTGGTGTCATTGTGATTGACAATG TCCTTTGGCATGGGAAGGTTGCTGATCCCTTGGTAATTGATGTCAAGACTGAGAGCATCAGAAGCTTCAACAGAAGGATAATGGAGGATGAGCGTGTAAG CATCAGTATGGTGCCTATAGGCGATGGTATGACAATATGCCGGAAAAGGTGA
AA sequence Show only first row Show all	>Lus10036339 pacid=23174541 polypeptide=Lus10036339 locus=Lus10036339.g ID=Lus10036339.BGIv1.0 annot-version=v1.0 MAAANGVAYRCLAVATATPAISSARCCSSKAWNSIRKVSNLRCSSFKNNPSSTDVVVVAEDEKYGNKQIISLTPRLYDYILSNVREPEIMRQLREETAGM RGSQMQVSPDQAQLLAMLVQLLGAQRCIEVGVYTGYSSLAVALVLPEFGQLIACERDANSLEVANRFYKRAGVDHKVIAKHGMAAEILNSLIQNGESGSY DFAFIDAEKRMNHEYFELLLKLVKVGGVIVIDNVLWHGKVADPLVIDVKTESIRSFNRRIMEDERVSISMVPIGDGMTICRKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10036339 [exp]	0	1
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10018763 [exp]	8.1	0.8833
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	11.2	0.9128
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10043094 [exp]	11.4	0.9122
AT4G02725			unknown protein		Lus10014675 [exp]	17.2	0.9084
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10025637 [exp]	18.0	0.8503
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	18.2	0.8615
AT5G22340			unknown protein		Lus10034185 [exp]	20.0	0.9051
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	20.7	0.9061
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	21.0	0.8962
AT2G41950			unknown protein		Lus10029301 [exp]	22.8	0.8604

Compare expression of checked genes

Lus10036339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.