Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46910 268 / 2e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010277 [exp] 228 / 1e-74 AT2G46910 266 / 5e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10000058 [exp] 137 / 2e-41 AT2G46910 112 / 8e-32 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 43 / 0.0001 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10035384 [exp] 42 / 0.0002 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183700 [exp] 270 / 4e-91 AT2G46910 366 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 44 / 7e-05 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10036340 pacid=23174405 polypeptide=Lus10036340 locus=Lus10036340.g ID=Lus10036340.BGIv1.0 annot-version=v1.0 ATGAGCTTAGCGATTAGCAATTGGTGGCACACAGCAAGCGGAAGGAGGAATTGGGGCTCAAAGACGGGCCATTCCAGCTCAAATTCCAGCGTGCATCTAA TTCCCAACAACAACAAGAAGAAGTTCACTTGTTTGGCAACGGCTCTAGCTACCGACACTGTTTCTCGGGTGAACTTGGAAGGATGTAACAGTGGTTCTCC AATCGACCTTTTGATGCTTGATGGGACGTGGCGCCTGCAGTATACTTCTGCCTCTGATGTCCTCGTGCTTTTTGAGGCTGCCGCAAGGCTTCCTTTCTTC CAGGTTGGGCAGATCTTTCAGAAATTCGAGTGCCGGGATCGGTCTGATGGTGGTGTCATTCGTAACGTTGTTCAATGGAGTGTTCCTTCATTGTTGGAGG AACAAGAAGGAGGCACTCTTCTTGTTTCAGCCAAATTCGATGTTGTCTCTGCACGCAACGTCTATCTTCAGTTTGAAGAGATAAGCATACAGAACATCAA GATAAGTGAACAACTACAAGCTGTGATAGCTCCAGCAATCCTACCACGCACATTTCTAAGTTTACAGATCTTGCAGTTCATCCAGCAATTCAAAGCTCAG ATTCCAGTAGCAAGTGCGGATCCAGGAAGGCGGTCAGCGGGTGGGATGTACTACCTTTCTTACCTGGATAGGAATATGCTCCTGGGGAGATCAGTTGGAG GAGGCGGAGTTTTTGTGTTTACAAAAGCTCAGCCTCTCAACTTCTGA
AA sequence Show only first row Show all	>Lus10036340 pacid=23174405 polypeptide=Lus10036340 locus=Lus10036340.g ID=Lus10036340.BGIv1.0 annot-version=v1.0 MSLAISNWWHTASGRRNWGSKTGHSSSNSSVHLIPNNNKKKFTCLATALATDTVSRVNLEGCNSGSPIDLLMLDGTWRLQYTSASDVLVLFEAAARLPFF QVGQIFQKFECRDRSDGGVIRNVVQWSVPSLLEEQEGGTLLVSAKFDVVSARNVYLQFEEISIQNIKISEQLQAVIAPAILPRTFLSLQILQFIQQFKAQ IPVASADPGRRSAGGMYYLSYLDRNMLLGRSVGGGGVFVFTKAQPLNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	3.0	0.8624
AT3G47590			alpha/beta-Hydrolases superfam...		Lus10012836 [exp]	3.2	0.8318
					Lus10027957 [exp]	3.7	0.8427
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007955 [exp]	4.2	0.8273
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	9.5	0.7547
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026123 [exp]	11.4	0.8155
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	12.6	0.7628
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	20.1	0.8325
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	22.5	0.8375
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	28.4	0.8184

Compare expression of checked genes

Lus10036340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.