Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 409 / 2e-140 Eukaryotic aspartyl protease family protein (.1) AT1G03230 392 / 5e-134 Eukaryotic aspartyl protease family protein (.1) AT5G19110 156 / 3e-43 Eukaryotic aspartyl protease family protein (.1) AT5G48430 154 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT5G19120 136 / 6e-36 Eukaryotic aspartyl protease family protein (.1) AT5G19100 135 / 1e-35 Eukaryotic aspartyl protease family protein (.1) AT5G02190 58 / 5e-09 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT2G39710 58 / 7e-09 Eukaryotic aspartyl protease family protein (.1) AT3G52500 54 / 8e-08 Eukaryotic aspartyl protease family protein (.1) AT3G25700 54 / 1e-07 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021936 [exp] 401 / 2e-137 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 395 / 5e-135 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 392 / 3e-134 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 368 / 4e-124 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 282 / 8e-92 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 274 / 2e-88 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 273 / 2e-87 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10010278 [exp] 237 / 6e-75 AT1G03220 259 / 1e-83 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 228 / 2e-69 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054900 [exp] 475 / 2e-166 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 397 / 1e-135 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 366 / 9e-124 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 247 / 3e-77 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.008G203100 [exp] 239 / 3e-74 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 238 / 9e-74 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 235 / 2e-72 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 234 / 3e-72 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 229 / 3e-70 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 226 / 5e-69 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036343 pacid=23174374 polypeptide=Lus10036343 locus=Lus10036343.g ID=Lus10036343.BGIv1.0 annot-version=v1.0 ATGGCGCCTCATTACTCAATCCTCATCCTCCTAATCTCCACTCTCCTCTTCCTCTCCCCATCCACCACCGCCCAACAATCCTTCCGCCCCAAATCCCTTA TCCTCCCGGCCACTAAAGACCCCACCACCCTCCAATACACCACGCGCCTCCGCCAGCGCACCCCGCTCCTCTCTCTCACGCTCCTCCTCCACCTCGGCGG CGAAAACCTCTGGGTCGACTGCTCCTCCCCTAACTACGTCTCCTCCACCTACACCCCCGCACGCTGCCGCTCCTCCCTCTGCTCCCTCGCCGGTTCCAAC GGCTGCGGCGACTGCTTCTCCACTCCTTCCCCTGGCTGCAACAACAACACCTGCGGCGTCTCCCCCGACAACCCCATCACCCGCACTGCCACCTCTGGCG AACTGGCCACCGACGTCTTATCTCTCAACTCCACCGACGGATCCAACCCCACCCGCCCCGTTTCCGTGCCCCTGTTCTTATTCGCTTGCGCCCCGAATTT CTTGCTCCGCGGACTGGTCAACGGCACTGCTGGCGTGGCGGGTCTTGGTGGGACCCGCGTCGCCCTCCCATCCCAGCTGGCATCCGCATTCAGCTTCACC ATAAAGTTTGCCATCTGTTTGGGTAGCCGAGACGGCGTTGTTTTCTTCGGAGGCGGGACGTACAACTTTCTCCAGAATGTTCGTCTGACGTCTGAGTCGC TGACTTATACCAGGCTGGTGACGAATCCGGCTGCGGTCGCCGTCGGGGAGTCGGCAGGCGAGTACTACCTCGGAGTGAACGGGATAAACGTCGACGGGAA GTCGGTGGCGAATCTGAACACGTCGCTGCTTGCGATCGACGGCCAGACCGGGAGGGGAGGGACGAGGCTGAGCACGGTGGATCCGTACACGGTGATGGAG TCGTCGATATACTCCGCCGTCACATCGGCGTTCGTGCAGGCGGCGGCGGCAAGGAACATTACTAAAAGAGCCAAGGCGGTGGCGCCGTTCGAGATCTGCT TCGATTCGAGTAGGATCCCGCCGACGAGGATCGGGTATTCGGTGCCGACAGTAGATCTGTTGATGCTGAACCGAGGGAGCTCAACATCGTGGAGCTTGTT CGGAGCGAACTCGATGGTTCAGGTGAGCGATGACGTGGCGTGCTTGGGGTTTGTGAACGGTGGGCCCAACCCTCGGTCGGCAATCGTAGTTGGCGGGTAC CAGCTGGAGAACAATTTGGTGGAGTTCGATCTGGCTAGCTCTCGGATCGGGTTTAGCGGGTTGTTGCTTGGGAGGCAGACTACGTGCGCTAATTTCAACT TCACTTCTTCTGCGTGA
AA sequence Show only first row Show all	>Lus10036343 pacid=23174374 polypeptide=Lus10036343 locus=Lus10036343.g ID=Lus10036343.BGIv1.0 annot-version=v1.0 MAPHYSILILLISTLLFLSPSTTAQQSFRPKSLILPATKDPTTLQYTTRLRQRTPLLSLTLLLHLGGENLWVDCSSPNYVSSTYTPARCRSSLCSLAGSN GCGDCFSTPSPGCNNNTCGVSPDNPITRTATSGELATDVLSLNSTDGSNPTRPVSVPLFLFACAPNFLLRGLVNGTAGVAGLGGTRVALPSQLASAFSFT IKFAICLGSRDGVVFFGGGTYNFLQNVRLTSESLTYTRLVTNPAAVAVGESAGEYYLGVNGINVDGKSVANLNTSLLAIDGQTGRGGTRLSTVDPYTVME SSIYSAVTSAFVQAAAARNITKRAKAVAPFEICFDSSRIPPTRIGYSVPTVDLLMLNRGSSTSWSLFGANSMVQVSDDVACLGFVNGGPNPRSAIVVGGY QLENNLVEFDLASSRIGFSGLLLGRQTTCANFNFTSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10036343 [exp]	0	1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	2.8	0.9595
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	8.4	0.9599
AT3G17940			Galactose mutarotase-like supe...		Lus10005808 [exp]	9.2	0.9541
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003231 [exp]	9.2	0.9564
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	9.6	0.9659
AT4G01575			serine protease inhibitor, Kaz...		Lus10010286 [exp]	12.4	0.9540
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	13.7	0.9570
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	15.8	0.9634
AT3G01360			Family of unknown function (DU...		Lus10028821 [exp]	16.1	0.9461
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	16.7	0.9641

Compare expression of checked genes

Lus10036343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.