Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02910 592 / 0 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28740 119 / 4e-30 unknown protein AT1G55480 55 / 4e-08 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010280 [exp] 746 / 0 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10019188 [exp] 182 / 4e-50 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10011914 [exp] 121 / 2e-30 AT4G28740 374 / 5e-129 unknown protein Lus10010322 [exp] 58 / 7e-09 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10022845 [exp] 54 / 3e-08 AT4G28740 206 / 8e-67 unknown protein Lus10013403 [exp] 51 / 9e-07 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206300 [exp] 639 / 0 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G194500 [exp] 119 / 3e-30 AT4G28740 301 / 5e-101 unknown protein Potri.003G222200 [exp] 56 / 3e-08 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.001G002700 [exp] 42 / 0.0006 AT1G55480 303 / 1e-101 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat CL0020 [flax] [poplar] PF11998 [flax] [poplar] DUF3493 Low psii accumulation1 / Rep27
Representative CDS sequence Show only first row Show all	>Lus10036345 pacid=23174504 polypeptide=Lus10036345 locus=Lus10036345.g ID=Lus10036345.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCTGCTGTTTCCCTTAACCAGCATCTTCTCTTCCTCTCTAATTCAACCCCTGGACGCTCGATTTCGACCAACAGCGCTCTTTCATCTTGCC TCCGGCGAGAAAGATTGATAAGTAGCCCTCCGAAGAAGAAGCGTAGTCTCTCTTCCATAACCTTTTCTTCTTCTCCTTCTTCACCGCTAGCTTCTCAGTC ACCTGAAGACGCCACTGAGAAGACAGCGGAATCCTGCGTCAATCTAGGCCTCTCACTCTTCTCAAGAGGACGGGTTAAAGATGCTCTGGTCCAATTTGAA ACGGCGCTTAGCTTGGATCCTAACCCCATCGAGGCCCAAGCTGCTCTCTATAACAAGGCTTGCTGCCATGCTTACAGAGGAGAAGGGAAGAAGGTTTCTG ATTGCTTGCGAACAGCTTTGAGAGAGTATAACCTCAAGTTCTCCACCATTCTTAATGATCCGGACTTGGCATCATTTAGAGCTTTGCCTGAGTTTAAGGA ACTGCAAGAAGAGGCTAGGCTGGGTGGAGAAGACATAGGCGGAAGTTTCCGAAGGGATCTCAAACTCATTAGCGAAGTCCAAGCACCATTTCGAGGGGTT AGGAGATTCTTTTACCTTGCGTTCATAGCGGCTGCAGGAATATCAACCTTCTTTACGGTTCCTAGGCTTGTTCGTGCGATCCTAGGTGGTGATGGTGCCC CCGATCTATTGGAAACCGCTGGGAATACTTTGATTAATATAGGAGGTATTGCAGTTCTTGTTGCGTTGCTTGTGTGGGATAATAAAAAAGAGGAACAACA ACTTGCACAGATAACCAGAGATGAAACTCTCTCAAGGTTGCCTTTGCGCCTTTCGACGAATCGTGTTGTTGAGCTTGTTCAACTCCGAGATACTTACAGG CCAGTAATTCTAGCTGGGAAGAAGGAGACTGTAAACTTGGCTATGTTGAAAGCAGAAAGATTCCGTACGGAGCTCCTCAGGCGAGGTGTTCTTTTGGTGC CTGTTGTATGGGATGAGAGCAGAAGATCAGAAATTGAGAAGAAAGGTTTTGGCACATCTCGAAAAGCAGCGGCTGCCCTTTCATCTATTGGGGAAGATTT TGAGAAACGAGCCCAGTCTGTTATCGCAAAATCGAAGTTGAAAGCTGAAATCCGATTCAAGGCCGAGGTTGTATCCCCTGCTGAATGGGAAAGGTGGATA ATGGATCAGCAAAAATCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATAATACTGCGGCTGGATGGTCGAGTTCGAAGATCCGGGAAAGGAATTCCCG AGTGGCCAGAGATGTTGAACGAACTGCCGCCAATGGAAGCGCTGTTAAGTAAACTAGAAAGGTAA
AA sequence Show only first row Show all	>Lus10036345 pacid=23174504 polypeptide=Lus10036345 locus=Lus10036345.g ID=Lus10036345.BGIv1.0 annot-version=v1.0 MAAAAVSLNQHLLFLSNSTPGRSISTNSALSSCLRRERLISSPPKKKRSLSSITFSSSPSSPLASQSPEDATEKTAESCVNLGLSLFSRGRVKDALVQFE TALSLDPNPIEAQAALYNKACCHAYRGEGKKVSDCLRTALREYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGGSFRRDLKLISEVQAPFRGV RRFFYLAFIAAAGISTFFTVPRLVRAILGGDGAPDLLETAGNTLINIGGIAVLVALLVWDNKKEEQQLAQITRDETLSRLPLRLSTNRVVELVQLRDTYR PVILAGKKETVNLAMLKAERFRTELLRRGVLLVPVVWDESRRSEIEKKGFGTSRKAAAALSSIGEDFEKRAQSVIAKSKLKAEIRFKAEVVSPAEWERWI MDQQKSEGVTPGEDVYIILRLDGRVRRSGKGIPEWPEMLNELPPMEALLSKLER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	0	1
AT1G02270			Calcium-binding endonuclease/e...		Lus10010095 [exp]	2.2	0.7893
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	4.2	0.8172
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	8.7	0.7898
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	9.7	0.7622
AT2G35200			unknown protein		Lus10036051 [exp]	9.8	0.7891
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	11.0	0.7706
AT2G36895			unknown protein		Lus10001393 [exp]	16.0	0.7482
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	20.5	0.7402
AT2G27290			Protein of unknown function (D...		Lus10005208 [exp]	22.7	0.8070
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	22.8	0.7407

Compare expression of checked genes

Lus10036345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.