Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02880 327 / 1e-113 TPK1 thiamin pyrophosphokinase1 (.1.2.3.4) AT2G44750 312 / 6e-108 TPK2 thiamin pyrophosphokinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010283 [exp] 313 / 2e-109 AT1G02880 296 / 3e-102 thiamin pyrophosphokinase1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130900 [exp] 353 / 2e-124 AT1G02880 395 / 8e-141 thiamin pyrophosphokinase1 (.1.2.3.4) Potri.002G205800 [exp] 335 / 1e-116 AT1G02880 385 / 4e-136 thiamin pyrophosphokinase1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04263 [flax] [poplar] TPK_catalytic Thiamin pyrophosphokinase, catalytic domain PF04265 [flax] [poplar] TPK_B1_binding Thiamin pyrophosphokinase, vitamin B1 binding domain
Representative CDS sequence Show only first row Show all	>Lus10036348 pacid=23174486 polypeptide=Lus10036348 locus=Lus10036348.g ID=Lus10036348.BGIv1.0 annot-version=v1.0 ATGGACGTCATGATTCACTCGTCTTCTTGCCTTCTCCCAACCTTGCCAACCGCCGCCGACCACCACCACCGCCCTCCAATAACCTACGCCCTGGTTATCC TCAACCAAAGCCTCCCTATATTCGCACCTCTGCTCTGGAATCACGCAAAACTTCGAGTTTGTGCTGATGGCGGAGCCAATCGTGTCTACGACGAAATGCC TCTTCTCTTCCCGGACGAATCCGCCGCCGATGTTCGCCACAGGTTCAAGCCAGACGTAATCAAAGGGGATATGGATTCGGTTCGATCTGAAGTTCTTAAC TTCTACAGTGATCTGGGAACCAAGGTAGTTGATGAATCTCATGATCAAGATACCACTGATCTGCACAAGTGTGTGGCTTATATAAGAGATGTGATACCAG ATGTCGACAAGTCCAGCCTTTGCATCCTTGTAACTGGATCGCTCGGAGGTCGTTTTGATCATGAAGCTGGCAACATCAATGTCATACATCGCTTCTCAAC CACGAGGATAATCCTTCTATCAGATGAATGCCTCATTTACCTACTCCCGAAGACTCACCGCCACGAAATACACGTGAACTCCTCGTTCGAGGGGCCGCAT TGTGGTCTCATCCCAATAGGAAAGCCGTCGATGAGAACTACAACAAACGGTCTTCAATGGGACCTCAGTAAGTGTACCTCTTTACCAAACTGGATTGCCC TCGTGCTTGCTAAAATGCTAGTAGCTTATAGAAGGCTGGGACTGGAACAATGA
AA sequence Show only first row Show all	>Lus10036348 pacid=23174486 polypeptide=Lus10036348 locus=Lus10036348.g ID=Lus10036348.BGIv1.0 annot-version=v1.0 MDVMIHSSSCLLPTLPTAADHHHRPPITYALVILNQSLPIFAPLLWNHAKLRVCADGGANRVYDEMPLLFPDESAADVRHRFKPDVIKGDMDSVRSEVLN FYSDLGTKVVDESHDQDTTDLHKCVAYIRDVIPDVDKSSLCILVTGSLGGRFDHEAGNINVIHRFSTTRIILLSDECLIYLLPKTHRHEIHVNSSFEGPH CGLIPIGKPSMRTTTNGLQWDLSKCTSLPNWIALVLAKMLVAYRRLGLEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10036348 [exp]	0	1
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10037698 [exp]	8.7	0.8083
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	15.0	0.8378
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	25.6	0.7836
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	26.8	0.8301
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10019949 [exp]	28.5	0.7834
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	29.2	0.8342
AT2G30620			winged-helix DNA-binding trans...		Lus10006562 [exp]	41.2	0.8294
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10005019 [exp]	43.1	0.7405
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	57.3	0.8095
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	62.2	0.7909

Compare expression of checked genes

Lus10036348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.