Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01770 265 / 3e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014782 [exp] 456 / 5e-156 AT1G01770 822 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157400 [exp] 290 / 1e-91 AT1G01770 843 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07287 [flax] [poplar] AtuA Acyclic terpene utilisation family protein AtuA
Representative CDS sequence Show only first row Show all	>Lus10036349 pacid=23174598 polypeptide=Lus10036349 locus=Lus10036349.g ID=Lus10036349.BGIv1.0 annot-version=v1.0 ATGTCGCCACCGTCTGATCTGATCGCCGTCGTCCGGTCACGTCACCGTCGCACCATCCGTCACCGCCGCACTCGTCCGGTCGCTGCCCCCACGATTTCCA AAAAAAAGAGGGTGAATCCTCAGAGGCGGAGGGAGAAGGTCTACGTTGGCTGCAGTGCAGGATTCAGCAGCAACAGGCCGTCGGCTGCTCTGAAGTTGCT CCAGCGCGTTCCGGAGCTGAACTATCTCGTCCTTGACTGTTTGGCCGAACGCACTCTTCTTGATCACTTCCATGCTATGGCCTCCGGCGGCGATGGCTTT GATCCACGCATGGATAAGGGGACTTGCATAATCACCAACATGGGCGCAATGGATCCAATTGGAGGACAGGACAAAGTTCTCCAGATCGCTAGTAAGCTCG GGTTGAGTGTTTCGGTTGCGATTGCTCATGAGGTGATAAAAATCGGGATATCTGCTGAGGTTCGTTCTTGGATGGGAGAGGCCTGTGTCAGTGACTGGAT AATTTCGTATATCATTGGACTTGATAGCCTAAAGGCCATTGACATTCATGCTGCTGCTTCAGCATGCAACAGTGAAGATATCAGGTTGCGAATGGATGGA CTATTCAAGTCGAAGGACGATGGAATTCGGTTTACACATGAGTTCACAGCTTTATATACTAATGGACCTGCAGGAGGCGGTGGCATTAGCACCGGACACA AGAAAGAAATCAAAGAACTGGTTGCACGTGAAAATGTTCTGTGGCGTGTGCACTCGAAACGAACCAATCCAAGTAAAGAAGATCCCACACCAAGACATGT GGCAAGAACAGGTGATCATAGTGAATCTTCATCGCCAGAAAGTACAATTTCCTGTCCAGCATCGTCTCGGCCAGTCCCTACTCCAGCTCCCTCCGGCCAG AAGATTGTGTTGTACGAGGTAGCACATAGTAGAGCCAGCGATAAAGGAAACGACTTGAACCTGTCTCTGATACCCTACTTCCCTGGAAATGTTGAGAGAT TGAAGCTGATAGTAACACCCGAGTGGGTAACCAAAGTTCTCTCCCCACTATTGAACGAGTCATCGTTTCTTGACGCGGAGGACATCTCGAAGAGAGATGA AAGAGGCGACAAACAAGTTAACGTCGAAATTTATGAAGTCAGAGGAGTCCAAGCGCTGAACATTGTGGTCCGGAACATTCTAGATGGCGGTGTAAATTGC TCGAGGAGGATCGACCGGCATGGAAAGACTGTCTCAGATGTCTTACTGTGCCAGCAAGTTGTGTTACCTCCCCTGGAAGCATGA
AA sequence Show only first row Show all	>Lus10036349 pacid=23174598 polypeptide=Lus10036349 locus=Lus10036349.g ID=Lus10036349.BGIv1.0 annot-version=v1.0 MSPPSDLIAVVRSRHRRTIRHRRTRPVAAPTISKKKRVNPQRRREKVYVGCSAGFSSNRPSAALKLLQRVPELNYLVLDCLAERTLLDHFHAMASGGDGF DPRMDKGTCIITNMGAMDPIGGQDKVLQIASKLGLSVSVAIAHEVIKIGISAEVRSWMGEACVSDWIISYIIGLDSLKAIDIHAAASACNSEDIRLRMDG LFKSKDDGIRFTHEFTALYTNGPAGGGGISTGHKKEIKELVARENVLWRVHSKRTNPSKEDPTPRHVARTGDHSESSSPESTISCPASSRPVPTPAPSGQ KIVLYEVAHSRASDKGNDLNLSLIPYFPGNVERLKLIVTPEWVTKVLSPLLNESSFLDAEDISKRDERGDKQVNVEIYEVRGVQALNIVVRNILDGGVNC SRRIDRHGKTVSDVLLCQQVVLPPLEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01770			unknown protein		Lus10036349 [exp]	0	1
AT1G16040			unknown protein		Lus10015585 [exp]	1.0	0.9095
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	1.4	0.8893
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	1.7	0.8726
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	4.9	0.8167
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	6.3	0.8336
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	6.5	0.8147
					Lus10009515 [exp]	7.3	0.8383
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	7.4	0.8539
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	7.7	0.8208
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	8.2	0.8582

Compare expression of checked genes

Lus10036349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.