Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00460 311 / 3e-105 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 302 / 1e-99 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 275 / 2e-89 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT5G02010 255 / 1e-80 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 239 / 2e-74 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 236 / 7e-73 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 223 / 5e-68 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT1G79860 221 / 5e-68 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G24620 211 / 5e-64 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G52240 212 / 1e-63 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036352 [exp] 536 / 0 AT1G01700 387 / 2e-132 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10014779 [exp] 518 / 0 AT1G01700 554 / 0.0 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10009874 [exp] 255 / 2e-80 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 251 / 7e-79 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 252 / 7e-78 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 250 / 3e-77 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 240 / 2e-74 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10040248 [exp] 240 / 3e-74 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10025101 [exp] 239 / 7e-74 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084200 [exp] 367 / 3e-125 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 367 / 4e-125 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.010G196000 [exp] 251 / 1e-78 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 253 / 3e-78 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.006G092600 [exp] 248 / 2e-77 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.008G062000 [exp] 245 / 4e-76 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.004G179742 [exp] 240 / 1e-74 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 239 / 4e-74 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 228 / 2e-70 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.001G183800 [exp] 224 / 9e-69 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10036351 pacid=23174411 polypeptide=Lus10036351 locus=Lus10036351.g ID=Lus10036351.BGIv1.0 annot-version=v1.0 ATGGAGAATTCATCGTCCAGCTACGACGGAAGCTATGATCTTGGGTACTCGACGATGAGCGGGGATTCAACTGTGTTCGGAAGGACTTACTCCGAAACGT CGGAGAACAACAGCTGCTACTCGAGTGAGCCGCCGTCTCCATGTGATTGGCAGTCAAAGTCAACCAAACTCAGAGGAGGAGGATCTTCTTATCATCTCAA CAGATCTCTGTTGGCTAAGCAGGATATGATGAAGCCCAAGATTCATCAGAACCAGGTCAATGTTGCTGCTGATGCTGATGCTGACCACGATGAAGATCAC GAGTCCACTGACTTGGAACTTGAGATGATGAAAGAGAGGTTTTCGAAGCTTCTGTTGGGAGAAGACATGTCGGGAAATGGAAAAGGTGTATGCACAGCTG TTACCATTTCCAACTCCATAACCAATCTCTATGCGACTGTGTTTGGGCAGAATTTGAGGTTGGAGCCATTGAAAGCAGAGAAGAAAGGGATGTGGAGGAG AGAAATGGATTGTCTTCTGTCTGTGTGCGATTACATCGTTGAACTCATCCCCAAATCTCAGAACCTTCGCGACGGAACTGCTCTCGAGGTGATGGAAAGC AGGGTGAGATCAGACATTTACATGAACCTTCCAGCACTCAAAAAGCTAGACGCCATGCTCATAGAAATACTGGAAAGTTTCAGTGAATCAGAGTTCTGGT ATGCAGAACAAGGAAGCATGTCATCAAACTCGACCCGATCTGGTTCGTTCAGGAGGGTAGTGATCCACAGGACAGAAGAGAAATGGTGGGTCCCTGTTCC ATGTGTTCCTTCCGGTGGGATCTCCGAGAAATCGAGGAAACATCTGCGAGATAAGCGCGACTGCTCTAACCAAATCCACAAGGCAGCCATGGCCATCAAC ACCAGCATTCTCGCCGACATGGAGATCCCCGAATCGTACATGGATTCCCTCCCCAGGGTACGTAAAAGCCTTCGAACTTTCCGCTGTCTTGTTTCAAAAT ATTAG
AA sequence Show only first row Show all	>Lus10036351 pacid=23174411 polypeptide=Lus10036351 locus=Lus10036351.g ID=Lus10036351.BGIv1.0 annot-version=v1.0 MENSSSSYDGSYDLGYSTMSGDSTVFGRTYSETSENNSCYSSEPPSPCDWQSKSTKLRGGGSSYHLNRSLLAKQDMMKPKIHQNQVNVAADADADHDEDH ESTDLELEMMKERFSKLLLGEDMSGNGKGVCTAVTISNSITNLYATVFGQNLRLEPLKAEKKGMWRREMDCLLSVCDYIVELIPKSQNLRDGTALEVMES RVRSDIYMNLPALKKLDAMLIEILESFSESEFWYAEQGSMSSNSTRSGSFRRVVIHRTEEKWWVPVPCVPSGGISEKSRKHLRDKRDCSNQIHKAAMAIN TSILADMEIPESYMDSLPRVRKSLRTFRCLVSKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036351 [exp]	0	1
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	1.0	0.9749
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	6.5	0.8884
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	6.7	0.8360
AT2G15730			P-loop containing nucleoside t...		Lus10021749 [exp]	6.9	0.8535
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	15.0	0.8654
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	16.2	0.8614
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026819 [exp]	16.4	0.8043
AT1G52155			unknown protein		Lus10025835 [exp]	16.8	0.8037
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014712 [exp]	25.9	0.7876
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	27.2	0.8508

Compare expression of checked genes

Lus10036351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.