Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00450 1707 / 0 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014778 [exp] 3982 / 0 AT4G00450 1941 / 0.0 CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159900 [exp] 2655 / 0 AT4G00450 1880 / 0.0 CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1) Potri.014G084500 [exp] 2642 / 0 AT4G00450 1845 / 0.0 CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09497 [flax] [poplar] Med12 Transcription mediator complex subunit Med12
Representative CDS sequence Show only first row Show all	>Lus10036354 pacid=23174367 polypeptide=Lus10036354 locus=Lus10036354.g ID=Lus10036354.BGIv1.0 annot-version=v1.0 ATGCAAAGGTATCATGCTGCCAGTTCCACTAATACGGCAAATAACAGTGCACTTGGTGGTGCATCTGCTAGGGATGCCTCCCGGATTGATTCTTCTTCTT TGTCATCCAACTTTTCCGTAAACTCTAGGCGTTTGACTCCCCTGGTAGCATACAAGTTGAAGTGTGAGAAAGAACCTCTAAACTCCCGACTTGGGCCTCC TGATTTTCATCCACAAACTCCCAACTGTCCAGAGGAGAACCTCACCAGAGAATATGTACAATCTGGATACAGAGAGACAGTTGAAGGACTTGAGGAAACT AGAGAGATCTCATTGACTCAGATTCAAACATTCAATAAGCCTGCCGTGATAAAGTGCAAAGAGTCGATCCGCAAGTGTTTGAGAGCTATCAACGAGTCTC GTGCTCAGAAGCGGAAGGCTGGTCAAGTTTATGGGGTTCCTCTGTCTGGTTCATTACTCACTAAATATGGTGTCTTTCCTGAACAAAGGCCATGCAGTGA AGACTCCAAGAAGAAATGGATTGAGGCTTTGGCACAACCGCATAAGAGATTGCGTTATTTAGCTGATCATGTCCCTCATGGGTACCGGAGGAAAGCACTT TTTGAAGTTCTTGTCAAGAATAATGTACCACTGCTTAGGGCAACTTGGTTTATTAAAGTTAGTTATCTTAATCAGGTCAGGCCAAATTCCTCAACCATTG CTTCTAGTACACAAGATAGGAGTCAGTTGTCGCGAACAGAGTTGTGGACAAAAGATGTTATTGAGTTTTTGCAACACCTTCTGGACGAATTCTCCACCAA AACCAATAGCCATTCTGTTCCACATAACAGAGATCGATCCCAGATGCTTTATGTTGGCTCAATGCAGCAGAAGAATGATCCTTCATTGGTTTCTGTCGAT GGGGATGAGCCTTCTCTAAATTTCAAGTGGTGGTATGTTGTGCGGTTGCTGCATTGGCACCATTCTGAAGGGCTGCTTCTTCCTTCTGTAGTAATTGATT GGCTTCTTGGTCAACTACAGGAAAAGGACTTGCTTGAGATTTTGCAGCTGTTTCTGCCTATCATATATGGCTTCTTGGAAGCAATTGTCCTGTCACAAAC ATATGTTCGTACTCTTGCAACTGTTGCTGTTCGCTTCATCCGTGAAACATCACCTGGTGGGTCAGATTTGGTGGATAATTCTAGGAGGGCCTATACTACT TCTGCTTTGGCGGAGATGCTTCGGTATTTGATATTGGCTGTGCCCGATACGTTTGTTGCTCTGGATTGCTTTCCTCTGCCACCGAGTGTATTGTCTTACG CAGCAAGTGATGGAACTTTTGTGTCGAAGTCATTGGAGGATGCGAGAAGGGTGAAAGATGGTTCAACAGAAGTTGGTCAGGTTGTTTCTTCTATTCAGAA ACGTGCATATAATCTTGCAAGGGCTGTGAGCCCCGGCTACCCATGCCATAATGTGGCTAAAGCTGTGAAGGCTTTAGACAAAGCTCTTTTTCATGGAGAT GTTCGAGGGGCTTATGGGTTTCTTTTTGAACAATTTTGTGATGAAGCTGTTGATGAAGGCTGGATAGAAGAAGTGAGTCCCTCTTTAAGATCTTCGTTGA AGCGGCTACGGACCGTTAATCTATCTATTGTTTCTTCTGTTTTTTTCCTTTGTGAGTGGGCAACATCTGAATATAGGGATTTTAGGGCTTCCAGACCTAA TGACCTGAAGTTGACTGGAAAAGAAGACACTGCTCAGGTTTATATTGCGTGCCGTCTACTAAATCTAAAGATAAGAGATATGCAAGGTGGTCATAGAATG AAGAATGAAAAATACAAAGGCCCCAAAAGCTCATCAGATTTGTTTGAAAGCCCTGATGACTCGGATAAAGCTAAAGTTCTGAAGCGCTTTCAGCTGCTTA TACTGGAACTAATGCGCGCTGGAATATTCCACCCTCATGCATATGTCAGGCAGCTGATTATAAGTGGAATCATGGATTCAACCTTAAATGTTGGTGATCA TGAAAGGAAAAAACGTCATTATCAGATGTTGAAACAGTTACCTGGATCCTTTATTGGCGACGTGTTAGAAGAGGGAAAGCTCGTGGAAGGATCACGGATT TTAGAGACTATGCGCATTTACTCAAATGAGCGCCGTCTTCTCCTTCGAGGAATTCTAAATGGATCGCTTAAAAGCTCAGTCAAATCAAGGAAAGAAGAAC AGGAGAAAAAGAGTAGGATAGCACCGGCGAAGGATGATGCTCTTTCTGATCACTGGAAAACTATCAAATCTCTGTCTAGTAACTCAGCTTTGAAAAAAAT GAAGACTGAGGCTAAGGTGGAAAATCTCAAAGCTTCCATAGCCTTATTGTTGCAGTTCCCTAAATGCATTACGGTTTCAGATTCAGGGGTTGACGAATCT ACAAGTGGCAAAAGGTCTTTTGAGTCGGTCAGCAGTAAGTTAGATGTGATAGAAGGTACACCAGGTTGTGAAGAGTGTAAGAGAGCCAAGCGGCAAAAAT TAAGCGAGGAAACAAGCTCAGTCACTCAGGGACATTCTCCTGTCTCTGATGATGAAGATACATGGTGGATGAGGAAAGTGCCTAAGACCTTAGATCAGTC GAAAGTTGATCCACCTATCAAGTCATCCAAGCAAGCTCCCAAGAGTAGACAGAAAGTTGTCCGCAAAACTCAAAGCCTGGCCCAACTAGCAACAGCTAGG ATTGAGAATAGTCAAGGAGCTTCTACTAGTCACGTCTGTGAGAGTAAGATCAACTGTCCTCATCACAGAACTCCAATTGATGGCGAGAATATTAAGACAG ACAGAACCAGAGCAGGAGGAGACATTATTGTGGTTGGAAAAGCTTTAAACCAACTGCGCCTCGTGGAGAAGCGGATGATTACAGTTTGGTTAAAAACTAT GGTAATGCAGCTCGTGGAGAACACTGAAAAGATTGCTTCCAAGGGAAACCAGTATAATATGCCTTATGTTCCTGATGATGATCGGAACTCCGCAAGGTGG AAGCTTGGGGAGGATGAATTATCCGTCATATTACACCTAATGGATGTCTGTAATGATCTTGTGTCAGCAACCAATGGGAGAAGTATAATGATGTTACAGA GGAATATGGAAAGTCATGCTTGTGAAGTGGGTGAGGCTTTTTGGTTATCATCTCTGAGAAGGTATGAGAACATGATGATTGCCATAGATCTTCTCCCTGA TGTTCTGTCAACCATAATGCAGCGCCTTGCCACGCTACTCGCTTCTAATGTGAGAATTTCAGGCTCCTCAACCTTAGTTTATTCTCGATATCTATTGAAG AGATATAGCAATGTGTCAAGTATGGTAGAATGGGAGAAGAATCGCAAATCAACTTATGATAAGAGACTGATTTCTGAACTCGACTCTGGTCGGTCACCAG ATGGAGAGTTTGGGTTCCCTCTTGGAGTCCCAGCTGGAGTTGATGACCCTGATGACTTCCTTCGACAAAAGATAAGTGGAAACCGAATATCCAGGGTGGG GATGGGCATGAGAGATGTAGTCCAAAGGCATATTGATGATACTTTGCATTACTTCTTAGGCAAAGAAAGAAAGATCTTTGGTGCTGGTGCACATAAAGGT CCTGCTCCTGAGAAGTTGGATGATGGACACGTGGCACATCAGATAGTTATGGGGCTCATGGAGTGCATGCGGCAGACAGGGGGTGCTGCACAAGAAGGTG ATCCATCTTTGGTGTCCTCTGCAGTTTCTGCCATTGTTAATAATGTTGGACCAGCTATTGTGAAGATCCCAGATGTGCATCCATTCAATAATAATTCCAT TGCTCCACCTACAAATTCACTAACATTTGCTCAGCGAGTTCTGCATATCCATATAATTTGTCTGCGGTTGCTTAAGGAAGCTCTAGGTGAGCGTCAAAGT CGGGTTTTTGAGATTGCTCTAGCTACAGAAGCTTGTTCTGCTCTTGCGGCAGCCTATTCCCCTGGAAAGGCTTCTCGTGGGCAATTTCAGATGCCCCCCG ATACTCATGATTCCAGTACAAATTTTTCTAATGAAATTTCAGCGAAAGGATTGTTGGGGAAAGGGACAAAAAGTGCTGCTGCTATTTCAGCTCTGATAAT TGGTGCAGTTATTTATGGTGTTACTAACTTGGAGAGACTTGTTACAGTCTTGAGATTAAAGGAAGGACTGGATGTCATTCAATTTGTGAGGAGTACCAAA ACAAACTCAAATGGTAATGCTCGTACAATCGGGGCTCTCAAGGTAGACAACCTGCTTGAAGTGAATGTTCATTGGTTTAGGGTGCTTGTTGGAAACTGTA GAACCGTATCAGATGGTTTCATAGTGGAGCTTTTGGGTGAACCTTCTATTGTTGCTCTTGCAAGAATGCAGCGAATTTTACCTCTTAGCTTGGTGCTCCC GCCTGCTTATTCAATCTTTGCCCTTGTTTTGTGGAGACCGTTTATTCTAAGTAGTAATCTCGCAAACCGGGAAGATATCCATCTTTTATATCAGTCATTG ACCGTGGCTATTGGTGATGCTATTAAACATCTTCCATTCAGGGATGTATGTCTGAGGGACAGCCAAGGGTTTTATGATCTTGTTACTGCAGATGCCTGTG ATGCCGACTTTGCTGCAATATTAGATCTAAATGGTCTAGACGTTCATGTCAAGTCCATGGCGTTTGTTCCTCTCCGAGGAAGGCTGTTCTTGAACTCAGT CATTGATGGTCAATTGCCGAGCTCATTATTTACACAGGAAGATAGCAAGCGCACTTCTTTACTCGGGGGATCAAAACTCCCTCACTCGGAGAATGAGATG AAGCTCATGGATAAGCTTGTCAGAGTTCTGGATGCTCTTCAGCCTGCAAAATTCCATTGGCAGTGGGTTGAGCTCAGACTTCTTCTGAATGAGCAAGCCC TTACTGAAAACCTCGAGACTCGTGACATGTCCCTCGCTGATGCTATCCGTTCTTCCTCACCCGGTCCTGAAAAGGGGGCTGCTTCGGAAAACGAGAAAAA GTTCATCGAGTTGATCCTTACAAGGTTGTTGGTCAGACCTGATGCCGCACCCCTCTTTTCAGAGCTGGTCCATCTCTTTGGACGGTCACTAGAGGATTCA ATGTTATTGCACGTTAAATGGTTTCTAGGCGGTCAGGATGTCCTTCTTGGACGAAAAACCATTAGACAGAGGCTTGTTAATATTGCTGACAGCAAGGGGC TCTCTACTAAGGCCCAGTTCTGGAAGCCATGGGGTTGGTCAAGCTCAACGTCTGATCCAATCTCAAATAGAGGAGATAAGAAGTTCGAGAACGTTGCTTC TATCGAGGAAGGAGAGGTCGTCGATGATGGTGCCGACGCTAAAAAGTCTGTGAAAGGGTCTATACATATCTCTGATGTGGAATCTAACAGTGTGAGTCAA CACCATGTTACTGAGAGGGCACTTATTGAGCTAGTTCTTCCTTGCATAGATCAAGGCTCTGAAGACTCACGCAATACTTTTGCCAGCGATTTAATCAAGC AACTGAACAATATTGAGCTGCAAATAAACGCAGCGACTCGTGGAGTAAATAAGCAAGCAGGGACAGCCTCTCCTGGACTAGAGGGTGGTCCTGGAAGCAA GGTTAGTAATCGCAAAGGTATGAGAGGTGGTAGTCCTGGACTTTCTAGACGAACATCGGGGGCCGTGGATTCTTCTCTTCCCTCACCTGCTGCTTTGCGT ACTTCAATGTCGCTGCGGTTGCAATTACTGCTGAGATTACTTCCTACTATCTGTACTGATGGTGAGCCATCAGGACGGAACATGAAGCACATGCTTGCCT CTGTAATACTTCGTCTCCTTGGGAGCCGAGTTGTATACGAAAATTCGGAGGTGTCATCCACTCGTGCTCAAAATGTTCAACCCAAGAGGGAGTCTGAATC CTTAGCGTTGGAAGCTGCTAGTGTAAATTTATCTGGCGAAAGCCTCTTCGACCGACTATTGTTGGTCCTTCATGGTTTAGTGAGCAATTGCAAACCAGGT TGGTTGAAACCAAGGCCGCCTTCGAAAGCGGGCGGTGATTCTATTAAGGATTCCACCGGTTTTGACCGCGAACTCGTAGAGGGCTTACAGAGCGACTTGG ATCGTATGCAGCTACCTAGCGCTATCAGATGGCGAATCCAAGCAGCGATGCCGATTCTTCTTCCTTCTGTACGATGCTCCATCTCTTGCCAGCCTCCAGC TGTCCCTATTGCTGCAATTGCCGCACTTCAGGCCACAGTTTCATCGCCCGGAAACCCGCCACAAAGAAATTCTTCATCTACAACACGGGCGTCATCTGCT TTGCCAGGGAAGTTGTCGAAACAAGCACCACCACCGGTTCAGCAAGATGGTGATGTTGACATCGACCCTTGGTTACTTTTGGAAGACGGCACTGGATCCG GTCCATCCTCGGTCAATACTACTATAGTTGGCGGTAGCGACCAAGCGAATCTTCGGGCCTGTAATTTGCTCAAGGGGGCTGTACGCATCAGACGAACAGA CCTCACTTACATTGGTGCTGTGGACGACGACAGCTAA
AA sequence Show only first row Show all	>Lus10036354 pacid=23174367 polypeptide=Lus10036354 locus=Lus10036354.g ID=Lus10036354.BGIv1.0 annot-version=v1.0 MQRYHAASSTNTANNSALGGASARDASRIDSSSLSSNFSVNSRRLTPLVAYKLKCEKEPLNSRLGPPDFHPQTPNCPEENLTREYVQSGYRETVEGLEET REISLTQIQTFNKPAVIKCKESIRKCLRAINESRAQKRKAGQVYGVPLSGSLLTKYGVFPEQRPCSEDSKKKWIEALAQPHKRLRYLADHVPHGYRRKAL FEVLVKNNVPLLRATWFIKVSYLNQVRPNSSTIASSTQDRSQLSRTELWTKDVIEFLQHLLDEFSTKTNSHSVPHNRDRSQMLYVGSMQQKNDPSLVSVD GDEPSLNFKWWYVVRLLHWHHSEGLLLPSVVIDWLLGQLQEKDLLEILQLFLPIIYGFLEAIVLSQTYVRTLATVAVRFIRETSPGGSDLVDNSRRAYTT SALAEMLRYLILAVPDTFVALDCFPLPPSVLSYAASDGTFVSKSLEDARRVKDGSTEVGQVVSSIQKRAYNLARAVSPGYPCHNVAKAVKALDKALFHGD VRGAYGFLFEQFCDEAVDEGWIEEVSPSLRSSLKRLRTVNLSIVSSVFFLCEWATSEYRDFRASRPNDLKLTGKEDTAQVYIACRLLNLKIRDMQGGHRM KNEKYKGPKSSSDLFESPDDSDKAKVLKRFQLLILELMRAGIFHPHAYVRQLIISGIMDSTLNVGDHERKKRHYQMLKQLPGSFIGDVLEEGKLVEGSRI LETMRIYSNERRLLLRGILNGSLKSSVKSRKEEQEKKSRIAPAKDDALSDHWKTIKSLSSNSALKKMKTEAKVENLKASIALLLQFPKCITVSDSGVDES TSGKRSFESVSSKLDVIEGTPGCEECKRAKRQKLSEETSSVTQGHSPVSDDEDTWWMRKVPKTLDQSKVDPPIKSSKQAPKSRQKVVRKTQSLAQLATAR IENSQGASTSHVCESKINCPHHRTPIDGENIKTDRTRAGGDIIVVGKALNQLRLVEKRMITVWLKTMVMQLVENTEKIASKGNQYNMPYVPDDDRNSARW KLGEDELSVILHLMDVCNDLVSATNGRSIMMLQRNMESHACEVGEAFWLSSLRRYENMMIAIDLLPDVLSTIMQRLATLLASNVRISGSSTLVYSRYLLK RYSNVSSMVEWEKNRKSTYDKRLISELDSGRSPDGEFGFPLGVPAGVDDPDDFLRQKISGNRISRVGMGMRDVVQRHIDDTLHYFLGKERKIFGAGAHKG PAPEKLDDGHVAHQIVMGLMECMRQTGGAAQEGDPSLVSSAVSAIVNNVGPAIVKIPDVHPFNNNSIAPPTNSLTFAQRVLHIHIICLRLLKEALGERQS RVFEIALATEACSALAAAYSPGKASRGQFQMPPDTHDSSTNFSNEISAKGLLGKGTKSAAAISALIIGAVIYGVTNLERLVTVLRLKEGLDVIQFVRSTK TNSNGNARTIGALKVDNLLEVNVHWFRVLVGNCRTVSDGFIVELLGEPSIVALARMQRILPLSLVLPPAYSIFALVLWRPFILSSNLANREDIHLLYQSL TVAIGDAIKHLPFRDVCLRDSQGFYDLVTADACDADFAAILDLNGLDVHVKSMAFVPLRGRLFLNSVIDGQLPSSLFTQEDSKRTSLLGGSKLPHSENEM KLMDKLVRVLDALQPAKFHWQWVELRLLLNEQALTENLETRDMSLADAIRSSSPGPEKGAASENEKKFIELILTRLLVRPDAAPLFSELVHLFGRSLEDS MLLHVKWFLGGQDVLLGRKTIRQRLVNIADSKGLSTKAQFWKPWGWSSSTSDPISNRGDKKFENVASIEEGEVVDDGADAKKSVKGSIHISDVESNSVSQ HHVTERALIELVLPCIDQGSEDSRNTFASDLIKQLNNIELQINAATRGVNKQAGTASPGLEGGPGSKVSNRKGMRGGSPGLSRRTSGAVDSSLPSPAALR TSMSLRLQLLLRLLPTICTDGEPSGRNMKHMLASVILRLLGSRVVYENSEVSSTRAQNVQPKRESESLALEAASVNLSGESLFDRLLLVLHGLVSNCKPG WLKPRPPSKAGGDSIKDSTGFDRELVEGLQSDLDRMQLPSAIRWRIQAAMPILLPSVRCSISCQPPAVPIAAIAALQATVSSPGNPPQRNSSSTTRASSA LPGKLSKQAPPPVQQDGDVDIDPWLLLEDGTGSGPSSVNTTIVGGSDQANLRACNLLKGAVRIRRTDLTYIGAVDDDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	0	1
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	1.7	0.9742
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	2.0	0.9738
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	2.6	0.9732
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	2.8	0.9744
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	3.3	0.9751
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009601 [exp]	4.4	0.9666
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	4.5	0.9712
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	4.6	0.9645
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	4.9	0.9733
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	5.4	0.9589

Compare expression of checked genes

Lus10036354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.