Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45900 169 / 1e-43 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G00440 143 / 6e-35 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT3G61380 121 / 3e-28 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G01695 100 / 3e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G07620 66 / 8e-11 ATOBGM GTP-binding protein Obg/CgtA (.1) AT1G63670 64 / 3e-10 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT5G02390 55 / 2e-07 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014776 [exp] 1339 / 0 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 444 / 7e-143 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 323 / 3e-101 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10017797 [exp] 204 / 2e-55 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 205 / 9e-55 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10002008 [exp] 79 / 8e-15 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10028148 [exp] 73 / 2e-13 AT4G00440 89 / 3e-19 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 72 / 1e-12 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10016715 [exp] 66 / 7e-11 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084600 [exp] 395 / 3e-124 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 393 / 7e-123 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G103400 [exp] 89 / 7e-18 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.001G239500 [exp] 70 / 5e-12 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 69 / 1e-11 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 67 / 4e-11 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10036356 pacid=23174639 polypeptide=Lus10036356 locus=Lus10036356.g ID=Lus10036356.BGIv1.0 annot-version=v1.0 ATGGGGAAAATATCACAGAAGAGTTCTCATGTTCAATGTGAGAAGCCAGGATGTATGTGGAGCATAATGAGAATGTTGGATTTCCGATATGCTCGAATCA CTAACAAGTTGCTTCTCGATAGGCGATTCGAGAGCCGCAATCGTGCTGGCTCTCGAAAGGTGAAGAGCAAGCATGATACTATGATGACTGTTGACGAAAT TAACGAGGTGACCTCCGATTGTGAAGAAAATGTGGAGATAACATGCCGGCCAAGTGTGAAGGATCTCATAGAGGAAGATTTGCTAAACGAGCAATTATCT AAGAGTGATGATCCCACCTACTGTGCTGTTTCTGAACTGCCTTCCTATAATGGTGATATAGGTAGAACAATAGATGAGTTCTGCCATCAGAGAAACAGAA ATTGTGCGAAAAACGACCAAGGAAACGACGAAATGCATCAGCTTGACAATCAAAGTCCTGAACTTGAAGAGAAACTCAAGGAGATCTTGACTCTTTTTAT CAGTCAAAGACTCGCCGGTGACAGGAATCATCAAGCGGAAGATAATTTCAATGAAGATGTTCATCACTCTCAGGAACTCCGGGATGCACTTCGAATTATA AGCTCCGACGCGGAATTGGTTCTGCAATTCCTGCAGGGGGAAAGATCATTTCTTGGGAAATACATCGAGAAGAAGATGAGGAATTCTCAGGTACAAAATG ATGAGGAGCATTCACCAGAGCATGCCAGTGAAGTTTCAGCAGCAGCAGCAGCAGGAACAACAAAACAGCGGAAATTCTTCAGGAAAAAGTCGAAATCGCT CGAAATGACCATTCCTTTAGGAAACAACTTGCCTCAAGCTACGAACAGGATCGTCATTTTGAAGCCGGGACTGCAGAATATGGAAACGAAAATTGGTCTT GTCTCATCACATCAGTCTGAAATGACCAAGGGAGGTATTGAGAGGAGAAATTCCTCCCATTTTTCCCTCACTGAGATCAAAAGAAGGTTAAGAAATGCCA TGGGAAGAGAGCGGCAAGAAGGTTCAAACAATCGTCACAATGGAAGAAGTTCTGCAGCTAAAGAACATTTCTTTACTGAAATAATTGCCAGACACCCCAT GAGCTTCAATAAAAGAAAGAATTCTTCTGCCGAGACTATAGAGTGTAACAAAGGGAAGGAGCATCAAGAAGTTGGTAATAATCTTTGGGAAGCTAAGAAA CATCTTTCGGAAGTACTTACTAACTATCCTAATAAAGGAGAAATTTATCCAAAGGCCAAACCCCTTGGCCGGATTCTCTCTTTCCCGGAGCACAGTTCTT CTTCTAGTTGTTGCAGCTCCGGGAACGATTTCTGGTACGGTTTTGTACCAGCACGGATGAGCTTGCCAAACATAGAAAAGTTTCAGAGACGGGGAAGTAA TCTGGGCCATATATCGCTGTGTTCAGATTTGTCTGATGACGACAATAGCTCTGATAACAAAGCACAGGCTTCTTCAGACCCAAGTTCAAGTACCTTACAA GAGCTTTCATTGCCTCATTCTGAATTTCCTGTTGATGATGGTGGAGAAAAGAACGTAGATGAGGCGACCATTGAAGACTTCAAATTTATAGCCTCAGAAG AGATCAATGTTATTGATGATACTTGTGAAACAAGTAGCTGTACCGACACTGTGGATGAAAAAAATGGCGATTCTTGCGAGTTTCATGACGAGAGAATTGG TTCTGAGCTCTCGGATCATGAGTCTTCTCCATCCAAAAGGTCCCATGATCTAGAGTCCAATGACCTGCTCGGGCGGCCAAGTCCTATATCTGTTCTTGAC CAGATTTTTGTTGAGGAGGACATCAGTCCAGCTGCTACCAGATATCAATCAGTTCAACCCCGAAGGATTCAGTTTGAAGAAGAGGTTGACAGTTTCGACA GTACTGATGAAGACATCCACTTGAAAACCAGTACAGAATCAGCAGCAAAAGACTGTATATTCGAGTTCATAAAGATCGCACTCCTATCATCCGGTTTAAA CTGGGAGGAGTTGTATCTAACATCAGATTCTCCAGACCAGATTCTCGATCCGTCTAGTTGCGACGACTTCGAGCTCTTCCCTAACCAACTTTGTCACGAC AAGCAACTCCTATTCGACTGTACAGACGAGGCTCTCGCGGAACTTTACGAACGCTATTTCAGTTGCTCCCCGGGGCTATCATTAGGGAAGCCTCCTATTC GACCGGTCCCCGACATAGAGAATACTATCCATGAGGTGTGGGAAACGGTCTATTGGCATCTGCTTCCATTGCCAGCTCCACATAGTTTGGAACAGATAGT CACAAAGGACATGGATAGAAACAGCTCTAATTGGATGGACCTTCGAGGCGATGCTCAGACCGTGATTTTCGAAATTGGTGAAGCCATTTTCGATGACCTT GTAGAAGGGTCCATACTTGGCTACTGTGTAAATAAGTGGGATGATGGTGAGTGCTTCTGCATCAACTTTTAA
AA sequence Show only first row Show all	>Lus10036356 pacid=23174639 polypeptide=Lus10036356 locus=Lus10036356.g ID=Lus10036356.BGIv1.0 annot-version=v1.0 MGKISQKSSHVQCEKPGCMWSIMRMLDFRYARITNKLLLDRRFESRNRAGSRKVKSKHDTMMTVDEINEVTSDCEENVEITCRPSVKDLIEEDLLNEQLS KSDDPTYCAVSELPSYNGDIGRTIDEFCHQRNRNCAKNDQGNDEMHQLDNQSPELEEKLKEILTLFISQRLAGDRNHQAEDNFNEDVHHSQELRDALRII SSDAELVLQFLQGERSFLGKYIEKKMRNSQVQNDEEHSPEHASEVSAAAAAGTTKQRKFFRKKSKSLEMTIPLGNNLPQATNRIVILKPGLQNMETKIGL VSSHQSEMTKGGIERRNSSHFSLTEIKRRLRNAMGRERQEGSNNRHNGRSSAAKEHFFTEIIARHPMSFNKRKNSSAETIECNKGKEHQEVGNNLWEAKK HLSEVLTNYPNKGEIYPKAKPLGRILSFPEHSSSSSCCSSGNDFWYGFVPARMSLPNIEKFQRRGSNLGHISLCSDLSDDDNSSDNKAQASSDPSSSTLQ ELSLPHSEFPVDDGGEKNVDEATIEDFKFIASEEINVIDDTCETSSCTDTVDEKNGDSCEFHDERIGSELSDHESSPSKRSHDLESNDLLGRPSPISVLD QIFVEEDISPAATRYQSVQPRRIQFEEEVDSFDSTDEDIHLKTSTESAAKDCIFEFIKIALLSSGLNWEELYLTSDSPDQILDPSSCDDFELFPNQLCHD KQLLFDCTDEALAELYERYFSCSPGLSLGKPPIRPVPDIENTIHEVWETVYWHLLPLPAPHSLEQIVTKDMDRNSSNWMDLRGDAQTVIFEIGEAIFDDL VEGSILGYCVNKWDDGECFCINF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	0	1
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	1.7	0.8106
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	2.2	0.7705
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	3.5	0.7834
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	9.7	0.7999
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	9.8	0.7117
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	11.1	0.7125
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	11.5	0.7044
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10042476 [exp]	14.5	0.6080
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	16.4	0.7467
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10030041 [exp]	17.0	0.6353

Compare expression of checked genes

Lus10036356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.