Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18500 422 / 3e-145 DNAse I-like superfamily protein (.1.2.3) AT1G73875 331 / 9e-110 DNAse I-like superfamily protein (.1) AT5G11350 203 / 4e-58 DNAse I-like superfamily protein (.1) AT3G58560 125 / 7e-31 DNAse I-like superfamily protein (.1) AT3G58580 116 / 7e-28 DNAse I-like superfamily protein (.1) AT1G31500 97 / 6e-22 DNAse I-like superfamily protein (.1.2.3.4) AT1G31530 59 / 2e-09 DNAse I-like superfamily protein (.1) AT5G54130 52 / 4e-07 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G02270 50 / 2e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014775 [exp] 803 / 0 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10032490 [exp] 326 / 2e-107 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 199 / 1e-56 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 195 / 3e-55 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 124 / 1e-30 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 123 / 4e-30 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 123 / 4e-30 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 119 / 7e-29 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10026203 [exp] 100 / 5e-23 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057100 [exp] 330 / 3e-109 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 210 / 2e-60 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 127 / 1e-31 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 123 / 4e-30 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 92 / 4e-20 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.012G007600 [exp] 56 / 2e-08 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 53 / 2e-07 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.014G108200 [exp] 44 / 0.0002 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 44 / 0.0002 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10036357 pacid=23174691 polypeptide=Lus10036357 locus=Lus10036357.g ID=Lus10036357.BGIv1.0 annot-version=v1.0 ATGAACAGCTGCTGCGGCGACCGAGGCCTATCCTCCTGGCCCACCGCCATGCTCCCGCCCTCCCTCAGCCGACGACTCAGCTTCTCCACCAGAGCTTCCC AGCCTGCTCTTTTCCTCTGCTCTTCCAAATCCACAGTTAACTCACTTTCTTCTTCACAGTCTCGTTCACGTGGTCGTCCATTCTACAATCCTCTCGGCCG CCTCTGGATCGAAGCCGATGATCGTTGTCCTCCGCCGCCACCATCATCACAAGAGAGATTCACCGTCGTTTCTTACAATATATTGGGGGATCGAAACTCT TTCAATCACCCAGACCTATACCTAGACGTTCCTTCTTCGTACTTGAATTGGGACTATCGCAGAAGGCTCATTTGTGAAGAACTTATTGGATACGATTCTG ATATCATCTGTCTTCAGGAGGTGGATAGGTATTTCGATTTATTGAAGGTCATGCAGAAAGCTGGATACGAGGGTTCTTATAAGCGATGCACTGACAATAA GGTTGATGGATGTGCTGTGTTCTGGAAAGCTGATAAGATGCGGCTCTTAGAAGGAGAAAGCATTGAATTCAAACAACTCAGTCTTCGCGACAATGTTGCT CAGATCCTAGTTTTTGAGACATGTAGAGCTGAAGCAAGAAGGATACTGATTGGTAACATCCATGTGATCTTTCGCCCGAGTCGAGGAGATGTCAAATTAG GTCAAATTCGTAATCTCTCTTCAAGGGCACAGATTGTCTCAGAAAAATGGGGGAATATCCCTGTAATTCTCACTGGTGACTTCAATAGCACTCCCCAGAG TGCAATTTACAAGTTCTTGTCGTCGTCCAAGTTGAATATAAAGTTGCACGATAGGAAAAACTTGTCTGGGCAGAGGAACTTCCATCCCACTCAAGTTTTT GGTACCAAGCGAGAAACGGGAAGCCCATTGATATTAATGGACAGGTATCTCAACAACAACTGGACAGCTGAAGAAGTTACGGCTGCAACAGGCCACTCTA ACCGTGATTTTATCAAACACCCTTTGAAGCTCAGCAGCTCATATGCCACTGTTAAAGGTTCTGAAAGAGCGAGAGGGTTCAATGGTGAACCTCTAGCAAC GTCCTTCCACTCGAAATTTGTCGGTACTGTTGACTACATATGGCATTCTAATGGAGTTCAAACCATGGGAGTTCTGGACACTCTTCCGTTGGATTTCCTC AAGAGAATCGGTGGCCTCCCTTGCAAGACGCTAGGAAGTGATCACTTAGCTTTGGTTTCGGAATTCGCATTCACAGAAGCAACTGAAAAGAACATTACAG ACACAGTTCAGTCTACAAGCTCGGCATCTCCAAGGTTATAA
AA sequence Show only first row Show all	>Lus10036357 pacid=23174691 polypeptide=Lus10036357 locus=Lus10036357.g ID=Lus10036357.BGIv1.0 annot-version=v1.0 MNSCCGDRGLSSWPTAMLPPSLSRRLSFSTRASQPALFLCSSKSTVNSLSSSQSRSRGRPFYNPLGRLWIEADDRCPPPPPSSQERFTVVSYNILGDRNS FNHPDLYLDVPSSYLNWDYRRRLICEELIGYDSDIICLQEVDRYFDLLKVMQKAGYEGSYKRCTDNKVDGCAVFWKADKMRLLEGESIEFKQLSLRDNVA QILVFETCRAEARRILIGNIHVIFRPSRGDVKLGQIRNLSSRAQIVSEKWGNIPVILTGDFNSTPQSAIYKFLSSSKLNIKLHDRKNLSGQRNFHPTQVF GTKRETGSPLILMDRYLNNNWTAEEVTAATGHSNRDFIKHPLKLSSSYATVKGSERARGFNGEPLATSFHSKFVGTVDYIWHSNGVQTMGVLDTLPLDFL KRIGGLPCKTLGSDHLALVSEFAFTEATEKNITDTVQSTSSASPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	0	1
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	5.4	0.8563
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	6.3	0.8456
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	8.1	0.8408
					Lus10024153 [exp]	8.4	0.8389
AT2G30170			Protein phosphatase 2C family ...		Lus10010968 [exp]	9.5	0.8486
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	9.9	0.8336
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	9.9	0.8291
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	12.0	0.8341
AT5G61040			unknown protein		Lus10021155 [exp]	13.6	0.8378
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	14.5	0.8288

Compare expression of checked genes

Lus10036357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.