Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01690 154 / 2e-42 ATPRD3 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014774 [exp] 471 / 1e-167 AT1G01690 160 / 2e-45 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084800 [exp] 247 / 3e-78 AT1G01690 274 / 4e-88 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1) Potri.002G160100 [exp] 245 / 1e-77 AT1G01690 273 / 7e-88 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036358 pacid=23174603 polypeptide=Lus10036358 locus=Lus10036358.g ID=Lus10036358.BGIv1.0 annot-version=v1.0 ATGAAGCTGAAAATCAATAAAGCTTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCCGCATTCAAGGAGGCTGAGTTCTGTACAACCTGGAACACACC AATCATCGCAGCTCAGATCGCAACAGTCGCAACAATCGTTTTCGCAGGGATTTTCATCTCAGCATGGCTTGTTCTCTCAGCTCTCCCAGACTTCTCTCGA CGAGGCTTTCGTGAGCGATCAGAGACTTAACTCTCAAGAGCGGGAGAACCGAGTGAAGAAGGCATCGTCTGTCCCTCCCACTGACTGTACACGTGAAGAG AGTCAAATGCCTAATTCGAGATCATCCGTCACTCTCATGCGCAAGTGGAGTCGTGGCTCTACCGACGGCAAATGCCAAGTCAGTGATGAGCTTGAGCATC GCATTGGGACGATAGAGACTTCACTGAACAAGTTTGGCATGATGCTGGATTCTGTTCAACGTGATATAATGCAAGTAAATAAAGGAACAAAAGAAGTATT GCTGGAGGCTATGAACGGATTCTTTAATGATGGTTTCTTTAAGCAAGTTGTTGACCGGAACTTTTGTTCAGTGGATGGGATCCGGCAGAAGTTGCTTGTC CTTGACACCTCACTGCTAACAGTGAACAAGGGACTTGGAGATGTCAAATCTACCTTTGATGAAAGCTTGAAGTCTATGACAGAGCAGCACAAAAACGATG CATCGAAAGATAGAATACAGGAGATGTCGCTTCTGTTATCTTCCTTACCTGGACAGATGGAAGCCTCTCTACTGAAACTACAAGATACGCTTCATGCAAG CTGTATTCAGGAAATGCAGACAATGATCCGCAACATCGAGGCACCAAAAGTAAACAGTCCACAACCTGTGCTGCTTCCACCAAAGGCTAGTGCCCCCAAG ATGCATACTCAAGCTAGTGCCCCCAAGATTCCTGCTCGAGCAACTGATGTCCGGAGGGAGGACGCTTCGGGTTGGAAATCTATTAAGAGGGAACAAACTA CATTTTCAAGGAAACGAACCCAAGAGGAGCAGAAGCATGCAGATGGTCGTAACACCCAACCAACAATTGGAGCTGAAACGCATGATGGGAACAATCTGTG CTTCCCGGCATTCATCATCTACACGGCTGCACCGCCATTTTTTAAGCGAAACTACACTAGTTATTAA
AA sequence Show only first row Show all	>Lus10036358 pacid=23174603 polypeptide=Lus10036358 locus=Lus10036358.g ID=Lus10036358.BGIv1.0 annot-version=v1.0 MKLKINKACDLSSISVLPPPHSRRLSSVQPGTHQSSQLRSQQSQQSFSQGFSSQHGLFSQLSQTSLDEAFVSDQRLNSQERENRVKKASSVPPTDCTREE SQMPNSRSSVTLMRKWSRGSTDGKCQVSDELEHRIGTIETSLNKFGMMLDSVQRDIMQVNKGTKEVLLEAMNGFFNDGFFKQVVDRNFCSVDGIRQKLLV LDTSLLTVNKGLGDVKSTFDESLKSMTEQHKNDASKDRIQEMSLLLSSLPGQMEASLLKLQDTLHASCIQEMQTMIRNIEAPKVNSPQPVLLPPKASAPK MHTQASAPKIPARATDVRREDASGWKSIKREQTTFSRKRTQEEQKHADGRNTQPTIGAETHDGNNLCFPAFIIYTAAPPFFKRNYTSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10036358 [exp]	0	1
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	8.2	0.9153
AT3G44050			P-loop containing nucleoside t...		Lus10013377 [exp]	15.3	0.9092
AT4G02800			unknown protein		Lus10000658 [exp]	17.0	0.9103
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	22.1	0.9032
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10037184 [exp]	23.9	0.9012
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	23.9	0.9080
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	24.9	0.9078
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	27.9	0.9072
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	34.1	0.9060
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	35.1	0.9051

Compare expression of checked genes

Lus10036358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.