Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 584 / 0 U-box domain-containing protein kinase family protein (.1) AT3G49060 369 / 8e-116 U-box domain-containing protein kinase family protein (.1.2) AT1G72760 303 / 8e-92 Protein kinase superfamily protein (.1) AT1G16760 298 / 9e-90 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 296 / 2e-89 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G26150 296 / 3e-89 protein kinase family protein (.1) AT1G17540 293 / 5e-88 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 290 / 3e-86 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 287 / 4e-86 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G25160 287 / 7e-85 U-box domain-containing protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018835 [exp] 780 / 0 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 623 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 407 / 2e-131 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 305 / 3e-92 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10039245 [exp] 305 / 3e-91 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10020185 [exp] 294 / 4e-90 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 293 / 5e-90 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 288 / 1e-87 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10016557 [exp] 293 / 4e-87 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 671 / 0 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 635 / 0 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 426 / 2e-138 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 350 / 3e-108 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 343 / 3e-106 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.001G239100 [exp] 294 / 3e-88 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 291 / 6e-87 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 286 / 1e-84 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G078500 [exp] 281 / 2e-83 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 282 / 7e-83 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036359 pacid=23174518 polypeptide=Lus10036359 locus=Lus10036359.g ID=Lus10036359.BGIv1.0 annot-version=v1.0 ATGTCAACCAAATCCCTGTTCGCAGCCCCTGAGGCTGCATCATCAGCATCAGCATCGCCTCATCGCCCAGCGACGATGGAAGCTGAAGAGAAGGTATACG TAGCGGTCGGGAAGGTAGTGAAAGAGAGCAAGTCGGTCCTGACGTGGACCCTACATAACAACTCGGCTGGGAAGAAGATCTGCATCGTTCTAGTTCACAG CCCATCCAACAGGCTTCATCTATTTGGCGGACGTGAAGAGGATAGAGTCAACAGGATACTTGATGAGTACATCTCCATATGTCAAAAGATGGGATTTCGA GCAGAGAAGTTGATGATCGAGAATGAATCGACTGTGAAGGGGATTCTCGAGGTCATTTCTAGCTATGATGTTAGAAACCTTGTGATGGGAGCAGCATCAG ACAAGAACTATTCCAGGAATATGATGGAGATCAAGTCGAGGAAGGCGATATCTGTTCGTCTTCAAGCTCCTGTTTCTTGCCAGATTTGCTTCGTCTGCAA AGGCCGAATTATCCACATAAGGGAAGGTGTTTCCGATGTGGGTAATTACGTCAGGTCGTTCAAGAAACCACCGAGCAACAACGCTCAACCGGAGCAGCCG AGTGGTCTGTTCAGGTCCCGGTCGGAAGCTCATCGGCGGCAGCCGATGGACTTCGCTATTCCAGCGCAGGACTCACTCTCCGAGGTCTACGGCTATGGAG GAGGCAGGCTATCGGTGTCCACCACCACAATCACCGACGAAAACGAGAAGGTGCCATCAACACCGCGAGACACTTCGAACGAATTCAGTCCTCGCAGTTG CGTCCTGTCGCACTGTTCCTCCTCCGGCGGGACGAGAAGTGGTATTACTGTACCGAGGTTCCCTTCGCGAGTGGGGATGGAGCTGATGGTGAGCTCAGTA TCAGATACTATGTCCAAACAGCACGACGATGATCCGATGATGAAAGGAGATGAGATTCAGTCGGAGGGAAATTCATCAAGGAGAGAATCTCTGGAGGAAG CGGTGAGACGAGCTAAGGCTGAGAAAGAAGCGTTCGAAGAGTTCATAACCTTGAAGAGAGATGCTCTTGAAGAGGCATTCCGACGAGCCAATGCTGAGAA GGTCGCTGCCGAAGCCATTGAAACGGCCAAGGCATTGGAAACCTTACTATCCGAAGAGCTGAAGCGGAGGAAAGAAACAGAGGCAAACCTAGCGAAACAG AGAGAGGAATTCCGGAATACGGTGGAGGAGAAACTCCTCCTGGAGAAACAAATGGAGGAATCCAATGCTATAATGAAGGAGCTGGAGCAGAAGATCATGT CTGCTGTGGAGCTGCTGCAGCATTACAAAAAAGAACGAGACCAGCTGTTGACGGAGCGAGAGACCACAATGAAGGAGGCAGAGGAGCTCAAAAGAATCAC CACTACGAATTCCGGAACGTGGAACAGTGGTAGCAATCCATTGTTTCCGGAGTTCGCCAAGTCTGAGATTGAAGAAGCCACGAGCAATTTCGATGATTCG CTGAAGATCGGGGAAGGCGGATTCGGCAGCATCTACAAGGCTGAGATCAGATACACTCAGGTCGCCGTCAAGTTGCTAGATCCGAATGGCTTGCAAGGTC CATCTGAGTTCCATAAAGAGGTGGATATACTGAGCAAGATGAGGCATCCAAACCTGGTGACACTAATCGGAGCCTGCTCAGAATCGTGTGCCCTAATCTA CGAGTACCTCCCAAACGGAAGCCTGGAAGACCGACTCAACTGCAAGAACAACTCCCCGCCGCTGCCGTGGCGGATCCGGCTGAGAATCGCCGCCGAGGTC TGCTCCGTCCTGATCTTCCTCCACTCCTGCAAGCCAAACAGCATCGTCCACGGCGACGTCAAGCCGTCCAACATACTACTGGACGCCAATTTCGTCAGCA AGCTCAGCGACTTCGGAATCGCTCGCTGGCTCCACAACAAGGAAGGAGGAGCAGGAGGAGGAGGTTCGGCGAATCGGACAGTGTTCTGGCGAACGGATCC CAAGGGGACGCTGGCGTACATAGATCCGGAGTTCTTCTCGACGGGGAAGCTGACTTCGAAGTCCGACGTGTATTCGTTTGGGGTGATTCTGCTGCGGTTG TTGACTGGGAGGCCGGCGGTAGGGTTACAGACGGAGGTTCACTGCGCACTCAGTGAGGATAATTTGGAAGGAGTTCTGGATCCTTTGGCAGGGGAATGGC CCATGAAGCAAGCGGATGAGCTGGCTAGGCTGGCTCTGCAGTGTTGCGAGATGAATCGGCGGAATCGGCCGGATCTCGCGGCGGAGGTGTGGAGAGTGCT TAAAGTGTTCTTAATTTTGGAAGTTGATGTTGAGTGCTGTAGTTCTTAG
AA sequence Show only first row Show all	>Lus10036359 pacid=23174518 polypeptide=Lus10036359 locus=Lus10036359.g ID=Lus10036359.BGIv1.0 annot-version=v1.0 MSTKSLFAAPEAASSASASPHRPATMEAEEKVYVAVGKVVKESKSVLTWTLHNNSAGKKICIVLVHSPSNRLHLFGGREEDRVNRILDEYISICQKMGFR AEKLMIENESTVKGILEVISSYDVRNLVMGAASDKNYSRNMMEIKSRKAISVRLQAPVSCQICFVCKGRIIHIREGVSDVGNYVRSFKKPPSNNAQPEQP SGLFRSRSEAHRRQPMDFAIPAQDSLSEVYGYGGGRLSVSTTTITDENEKVPSTPRDTSNEFSPRSCVLSHCSSSGGTRSGITVPRFPSRVGMELMVSSV SDTMSKQHDDDPMMKGDEIQSEGNSSRRESLEEAVRRAKAEKEAFEEFITLKRDALEEAFRRANAEKVAAEAIETAKALETLLSEELKRRKETEANLAKQ REEFRNTVEEKLLLEKQMEESNAIMKELEQKIMSAVELLQHYKKERDQLLTERETTMKEAEELKRITTTNSGTWNSGSNPLFPEFAKSEIEEATSNFDDS LKIGEGGFGSIYKAEIRYTQVAVKLLDPNGLQGPSEFHKEVDILSKMRHPNLVTLIGACSESCALIYEYLPNGSLEDRLNCKNNSPPLPWRIRLRIAAEV CSVLIFLHSCKPNSIVHGDVKPSNILLDANFVSKLSDFGIARWLHNKEGGAGGGGSANRTVFWRTDPKGTLAYIDPEFFSTGKLTSKSDVYSFGVILLRL LTGRPAVGLQTEVHCALSEDNLEGVLDPLAGEWPMKQADELARLALQCCEMNRRNRPDLAAEVWRVLKVFLILEVDVECCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	5.5	0.8165
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	8.0	0.8417
AT2G40600			appr-1-p processing enzyme fam...		Lus10029039 [exp]	8.8	0.8162
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015647 [exp]	12.4	0.8128
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	16.7	0.8197
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10024347 [exp]	17.1	0.7561
AT5G45030			Trypsin family protein (.1.2)		Lus10017140 [exp]	17.4	0.7522
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	21.0	0.8108
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10000365 [exp]	32.3	0.7917
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	33.6	0.7677

Compare expression of checked genes

Lus10036359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.