Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55180 924 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT3G15730 542 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT5G25370 538 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G52570 535 / 1e-179 PLDALPHA2 phospholipase D alpha 2 (.1) AT2G42010 483 / 2e-156 PLDBETA1 phospholipase D beta 1 (.1) AT4G11830 472 / 4e-155 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 466 / 3e-152 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 461 / 2e-150 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G00240 461 / 6e-150 PLDBETA2 phospholipase D beta 2 (.1) AT4G35790 453 / 1e-147 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031634 [exp] 556 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 556 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 549 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10039806 [exp] 546 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 524 / 3e-175 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006718 [exp] 479 / 1e-157 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 474 / 9e-156 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10026375 [exp] 469 / 9e-154 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 468 / 5e-153 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037700 [exp] 1046 / 0 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.003G032800 [exp] 553 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.018G131200 [exp] 552 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.001G193000 [exp] 542 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 539 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.002G016100 [exp] 481 / 1e-158 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 472 / 5e-155 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 471 / 2e-154 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.005G246000 [exp] 468 / 9e-154 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 469 / 1e-150 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10036361 pacid=23174428 polypeptide=Lus10036361 locus=Lus10036361.g ID=Lus10036361.BGIv1.0 annot-version=v1.0 ATGGAACCCAAGCAAACATTTCTCCATGGGACCCTTGAAGTTACCATCTTTCATGCAACACCTTATACACCTCCTTTTCTCTTCAATTGTATACCATCAA ATGGGAGCCCAACTTACGTGACCATCAAAATAGACGACAAGAAGGTGGCAAAGACTACCAAACAAACCGACCGAGTTTGGAACCAAACCTTCCAAATCCT TTCCGCACATCATCTGGATTCAACGGTCACCATAACCATGAAAACAAAATGCTCCATCTTGGGGAAGTTCCACCTCAAAGCAGAGAAGATCGCCAACGAG ACGACCTTCATCAATGGTTTCTTCCCAATGATCTCCATTGGAAAGAAGGCTCGAAACTCGGAGCTCAAGCTCCGGTTCATGTTATGGTTTAAGCCGGCCA CGCTCGAGCAAACTTGGAGTCGAATTATTAGTAGTAACGGAGGATTTTATCAAGGGATCTGTAGGAATAATGCATCGTTTCCTCTAAGATCAAACTGTGG GGTGAGACTTTATCAGGATGCTCATCACGGCGATGAATTTCAGCCACCTACTGAGCTCTGTGGATCGCCAAGGAAGCTGTGGGAAGATATCTATAAGGCC ATTGATGATGCCAAGCATTTGGTTTACATTGCTGGTTGGTCTTTCAATCCCAACATTGCCCTTGTGAGAGACCCAGAAACAAGAGTGCAAGAAGGGTTAG GAGTGAAGTTAGGAGAATTGTTGAAAAGGAAAGCAGAACAAGGAGTAGCAGTTAGAATCATGGTATGGGACGACGAAACCTCACTTCCCTTCATCAAAAA CGGCGGCGTAATGGGTACCCGCGATGAAGATGCATTGGCCTACTTCAAACACACAAAAGTGATATGCAAACTGTGTCCTAGACTCCACGGCAAGTTCCCA ACTCTCTTCACCCACCACCAAAAGACACTCACACTCGACTCCTCCTTATCGTCGTGGCCGTCGGATTCGGACAGAGAGATCATGTCCTTCATCGGAGGGC TGGACTTTTGCGACGGGAGGTTCGACACGGATCGACATTCGTTGTTTCGGAGTATTAACAAGGAGTGTGATTTCTACCAGACGAGTATTAGTGGGCCGGT TGGGGTTGAGAGAGGTGGCCCAAGAGAGCCTTGGCATGATGTCCATGCTTGCGTTGTTGGGGAGGCTGCTTGGGATATTCTTAACAACTTTGAGCAAAGA TGGACCAAGCAATGTGGCGCTTCTTCGTTGCTCCCTGTAGCTTCCTCCTTGTCACATCGGAGAGGCACTCCAAGCAACGACAGAAACTGGAGTGTCCAGG TATTCAGATCGATCGACCACACGTCAGCAACTCAAATGCCACGTAACCTAACAGTCGAGACGAGCATCCACGAGGCCTACGTGGAGGCAATCAGGAAGGC GGAAAGATTCATCTACATAGAGAATCAATACTTCATAGGAGGGTGCCATATGTGGGAGACAGATCAAAATTGTGGGTGTACAAACTTGGTCCCCATCGAG ATTTCACTCAAGGTGGTGCAGAAGATTAGACAGAAGCAGAGGTTTGCAGTGTACATAGTGATCCCAATGTGGCCAGAGGGGCACCCTGAGAGTGAGACTG TGAACGACATTCTGCATTGGACTCGGGAGACCATGTCCATGATGTACAAGATCATTGGGGAAGCCTTGCGAGAAAGTGGCGAGTTGGGACATCCTAAGGA TTACTTGAACTTCTTTTGCCTTGCTAATAGGGAAATTGAGAGGGAACATGAGTTTGTTCCGACTTGTTCACCTCGTCCTTTAACGCAATACTGGTTGGCC CAGAAGTATCGGAGATTCATGGTGTATGTCCACTCCAAGCTCATGATAGTGGATGATGCCCACATATTGATAGGATCAGCAAATGTGAATCAAAGATCAA TGGATGGGCAGCGAGACACAGAGATAGCCATTGGATGCTACCAAACATTGCTTCCAACAAACAACAACAACAACAACAATGTCGACTATGGTAAACACTC TAATGATATTCAGAAGTATAGAATGTCATTATGGTACGAACACACGGGACGGCTCGTGGATCGAGACTTTCGAAACCCAGAAAGCCTGGAATGTGTGAGG AAGGTTTGCTCCATAGGAGATCAGATGTGGGAGATTTACAGTGGGGAGGAAGTGGTGGATATGGAAGGAGCACATTTGGTGAGTTACCCTGTAAATGTCA CAAAAGAAGGTGTTTTGGATGACCTAAATGTGAGTTATTTCCCAGATACAAAGACTCATGTTAAAGGGAGGAGATCTAAGATCATCCCTCCTATTTTCAC TACTTAA
AA sequence Show only first row Show all	>Lus10036361 pacid=23174428 polypeptide=Lus10036361 locus=Lus10036361.g ID=Lus10036361.BGIv1.0 annot-version=v1.0 MEPKQTFLHGTLEVTIFHATPYTPPFLFNCIPSNGSPTYVTIKIDDKKVAKTTKQTDRVWNQTFQILSAHHLDSTVTITMKTKCSILGKFHLKAEKIANE TTFINGFFPMISIGKKARNSELKLRFMLWFKPATLEQTWSRIISSNGGFYQGICRNNASFPLRSNCGVRLYQDAHHGDEFQPPTELCGSPRKLWEDIYKA IDDAKHLVYIAGWSFNPNIALVRDPETRVQEGLGVKLGELLKRKAEQGVAVRIMVWDDETSLPFIKNGGVMGTRDEDALAYFKHTKVICKLCPRLHGKFP TLFTHHQKTLTLDSSLSSWPSDSDREIMSFIGGLDFCDGRFDTDRHSLFRSINKECDFYQTSISGPVGVERGGPREPWHDVHACVVGEAAWDILNNFEQR WTKQCGASSLLPVASSLSHRRGTPSNDRNWSVQVFRSIDHTSATQMPRNLTVETSIHEAYVEAIRKAERFIYIENQYFIGGCHMWETDQNCGCTNLVPIE ISLKVVQKIRQKQRFAVYIVIPMWPEGHPESETVNDILHWTRETMSMMYKIIGEALRESGELGHPKDYLNFFCLANREIEREHEFVPTCSPRPLTQYWLA QKYRRFMVYVHSKLMIVDDAHILIGSANVNQRSMDGQRDTEIAIGCYQTLLPTNNNNNNNVDYGKHSNDIQKYRMSLWYEHTGRLVDRDFRNPESLECVR KVCSIGDQMWEIYSGEEVVDMEGAHLVSYPVNVTKEGVLDDLNVSYFPDTKTHVKGRRSKIIPPIFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	0	1
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	1.7	0.9949
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	2.4	0.9906
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	2.8	0.9922
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	3.2	0.9887
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	3.5	0.9890
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	5.9	0.9876
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	6.0	0.9887
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	6.0	0.9823
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	7.9	0.9731
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	8.4	0.9772

Compare expression of checked genes

Lus10036361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.