Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 838 / 0 U-box domain-containing protein kinase family protein (.1) AT3G49060 414 / 1e-131 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 349 / 6e-107 U-box domain-containing protein kinase family protein (.1) AT5G61560 345 / 1e-105 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 346 / 2e-105 U-box domain-containing protein kinase family protein (.1) AT5G61550 344 / 8e-105 U-box domain-containing protein kinase family protein (.1.2) AT5G57035 335 / 6e-102 U-box domain-containing protein kinase family protein (.1) AT2G19410 329 / 2e-99 U-box domain-containing protein kinase family protein (.1) AT5G26150 312 / 3e-94 protein kinase family protein (.1) AT1G78940 310 / 1e-93 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014772 [exp] 1646 / 0 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10039245 [exp] 531 / 6e-176 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 520 / 1e-173 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 469 / 9e-153 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 441 / 4e-142 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 436 / 4e-140 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 408 / 6e-129 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 396 / 2e-124 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10020185 [exp] 316 / 4e-97 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 1021 / 0 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 1003 / 0 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 578 / 0 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 485 / 6e-159 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.009G030400 [exp] 414 / 3e-131 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 405 / 6e-129 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 339 / 5e-103 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 318 / 6e-96 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 317 / 1e-95 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G225300 [exp] 303 / 3e-90 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10036362 pacid=23174473 polypeptide=Lus10036362 locus=Lus10036362.g ID=Lus10036362.BGIv1.0 annot-version=v1.0 ATGGCTGTGATGAGTCCGGCGCCACCAATTCCGCAGCTGGCCAGTCCGATGAATCTTGTTGAGTTTGGAGGTTCGAGGAGGATGAATAGCAGTAGGGGCA GTAGCAGCAGCATCGGAGAGGTTTCGAGAGGCGGTAGCAGCAGCAGCATCGGAGAGATTTCTCCGGTGGCGATAGTTATTGATGAGAAGATTTATGTCGC CGTGGGGAAAACCTTCGATAAAAGCAAGTCGGCGGTTGTCTGGGCTTTGCAGAATTCGGGAGGGAAGAAGATTTGCGTCCTTCACGTCCATCAACCTACT CAGATGATTCCTCTCTTGGGTGGCAAATTTGAAGCAAGTACGCTCAAGGAGCGGGAAGTCAATGCATACCGTGAGATTCAGAGAGGGAAAATGCGCAAGG TCCTTGCTGAATATCTTCGTCTATGTGGACGAGCTGGGGTCCGAGCTGAAGCAATGGTTACTGAGAAGGAATCCATTGAGGAAGGAATCCTTAAACTTAT TTCTAAGCATGGGATTAAGAAGCTTGTGATGGGAGCTGCAAATAACAGTCGCTACTACAAGAATATGACATCCCTCAAGTCGAAGAAGGCCATTTCCGTG AGGGAACAAGCACCTGCTTCTTGCCACATATGGTTTGTTTGCAAGAGCCATCTTATATACACAAGGCATGCTACTTTGCATCAAGATGATGAATCTGTTT CCTCTCTGCCACAAGGAAGCCCAAGTATAAGAACTGGAAATTTGCCCCGGTCCCATTCAGTTTATGTGAAGCCATCCAACCTGATTCAAGATCTGTTTAG GAGGGCGCCCTCTCTGAATCTTGATGCCAGATCCAATGCGGGGAGAGAAATGCTCCAAACTATGCCAGATGATACTAGAGCAGTGGTAAAACCACATAGG TCAGATGCTGAAGAGAATTCTTACATTCATGAATCGAGGAGTACTTCCAATGGTTCTGTTCTGTCATCGTGTTCTTCTGGAGGAATGGCCAATCTTGCCA TTGTTCCTAGTACGTTGACTGTAGGGAGTGACATGGCTGCAGAGATGAGCACAGTTCCTGAGCTTACAGACGATATTTGTCATACATCTCCCCCCAGTGT ACCGGAAATAACTGTGGTGGATCCTCTTTATGAACAACTTAAGCGAACAATGGAAGAGTCTGTGAACTCCGAGAGAGAAGCACTTGAGGAAGCAACCCGA CGTGCCAAAGCTGAAAAGAATACCATTGAGGCAATGCACAGGGTCAAGGCATTGGAAAGTCTTTATGCTGAAGAGTCAAAGCAAAGAAAAGATATTGAAC AGGCAATAGCAAGAGAACATGAAGAACTTGCAATAATGATTAATGACCAGGAAAAAGTCACAGAAGAACTTTGCCTTGCTTCCGATCGTAAATGTATGCT AGAAACCCAAATTAATGAAGCTGATCGGACAGCTACAGAGTTGGAGAAGAAGATCTTCTCTGCTGTTGAGCTTCTACAGAAATACAATAAAGAGCGAGAA GAGCTGCAGCTGGAGCGTGATAACGCACTAAGAGAAGCTGAAGAGCTGAGGAGAAGTAGAGCAGAAACCTCATATGGATCAACAACCGAGTTCTTCTCTG ACTTCAGATTCTCGGAGATTGAGGAGGCAACTAATAACTTCCATCCATCTCGTAAGATTGGGGAAGGTGGGTATGGTAGCATTTATAGAGGGGTACTGCA TCACACTGAAGTGGCTATAAAGATGCTCCATGCCAATAGCATGCAAGGTCCCTCGGAGTACCAACAAGAGGTTGATATCTTGGGCAAGATGAGGCATCCA AATCTTGTCACCCTTATTGGAGCCTGTCCTGAAGCCTGGACTCTTATCTATGAGTACCTTCCAAATGGAAGTGTTGAAGATAGACTGAGCTGCCGGGACA ACACTCCTCCTTTATCTTGGCAAACTCGAATACGGATAGCCGCTGAGCTTTGCTCGGTTCTCATGTTTCTTCACTCAAGTAAACCACATAGCATTGTTCA CGGTGATCTGAAACCGGCAAATATTCTCTTAGATTCCAACTATGTCAGCAAGCTCAGTGACTTTGGGATCGCCCGGCTACTTCAGCAAGGCGAAGGTTCA GGTATCGGTGAAACAATTTTTTGCAGGACTGACCCAAAGGATACTTTTGCATATATGGATCCAGAGTTTCTTTCGTGTGGGGAGCTTACTCCAAAGTCCG ATGTTTATTCATTCGGAATAATACTGTTGAGATTGTTAACTGGACGACCAGCTTTGGGTCTAGTCAAGGAAGTGCAGTATGCGTTAGACAAAGGCAACCT GAAAACTCTGTTAGACCCTTTGGCAGGGGACTGGCCTTTTCTGCAAGCCGAGCAGCTAACTCGGTTAGCACTGCGCTGCTGTGAGTTAAACCGGAAAAAC CGGCCTGATCTTGCATCCGAGGTATGGAGAGTGCTCGAACCTTTGAAGGCTTCATGTGGAGAGTCGTCAAGCTTTCGGATTGATTCAGAAGAGCCACGTC AGCCTCCTCTTTACTTCATATGCCCCATTTTCCTGGAACTGATGAGGGATCCACATGTAGCAGCCGATGGATTTACATATGAAGCAGAAGCGCTGAGAGG ATGGCTGGACAGTGGGCTAGAGACTTCGCCAATGACCGATGCGAAGCTTGAGCATAAAAATCTTGTGCCGAACCGCGCACTGCGTTCTGCAATCCAAGAG TGGCTTCAACAGTAA
AA sequence Show only first row Show all	>Lus10036362 pacid=23174473 polypeptide=Lus10036362 locus=Lus10036362.g ID=Lus10036362.BGIv1.0 annot-version=v1.0 MAVMSPAPPIPQLASPMNLVEFGGSRRMNSSRGSSSSIGEVSRGGSSSSIGEISPVAIVIDEKIYVAVGKTFDKSKSAVVWALQNSGGKKICVLHVHQPT QMIPLLGGKFEASTLKEREVNAYREIQRGKMRKVLAEYLRLCGRAGVRAEAMVTEKESIEEGILKLISKHGIKKLVMGAANNSRYYKNMTSLKSKKAISV REQAPASCHIWFVCKSHLIYTRHATLHQDDESVSSLPQGSPSIRTGNLPRSHSVYVKPSNLIQDLFRRAPSLNLDARSNAGREMLQTMPDDTRAVVKPHR SDAEENSYIHESRSTSNGSVLSSCSSGGMANLAIVPSTLTVGSDMAAEMSTVPELTDDICHTSPPSVPEITVVDPLYEQLKRTMEESVNSEREALEEATR RAKAEKNTIEAMHRVKALESLYAEESKQRKDIEQAIAREHEELAIMINDQEKVTEELCLASDRKCMLETQINEADRTATELEKKIFSAVELLQKYNKERE ELQLERDNALREAEELRRSRAETSYGSTTEFFSDFRFSEIEEATNNFHPSRKIGEGGYGSIYRGVLHHTEVAIKMLHANSMQGPSEYQQEVDILGKMRHP NLVTLIGACPEAWTLIYEYLPNGSVEDRLSCRDNTPPLSWQTRIRIAAELCSVLMFLHSSKPHSIVHGDLKPANILLDSNYVSKLSDFGIARLLQQGEGS GIGETIFCRTDPKDTFAYMDPEFLSCGELTPKSDVYSFGIILLRLLTGRPALGLVKEVQYALDKGNLKTLLDPLAGDWPFLQAEQLTRLALRCCELNRKN RPDLASEVWRVLEPLKASCGESSSFRIDSEEPRQPPLYFICPIFLELMRDPHVAADGFTYEAEALRGWLDSGLETSPMTDAKLEHKNLVPNRALRSAIQE WLQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	0	1
AT1G13990			unknown protein		Lus10037142 [exp]	2.4	0.8529
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	5.7	0.8195
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	5.7	0.7507
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	5.9	0.7976
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	6.6	0.8052
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	8.4	0.7944
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10017545 [exp]	9.4	0.7388
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	11.2	0.7837
AT1G01770			unknown protein		Lus10014782 [exp]	11.3	0.7854
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	12.7	0.8078

Compare expression of checked genes

Lus10036362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.