Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 510 / 7e-171 U-box domain-containing protein kinase family protein (.1) AT3G49060 357 / 3e-112 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 349 / 5e-109 U-box domain-containing protein kinase family protein (.1) AT5G61550 342 / 6e-106 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 339 / 5e-105 U-box domain-containing protein kinase family protein (.1) AT5G61560 333 / 3e-103 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 327 / 1e-100 U-box domain-containing protein kinase family protein (.1) AT5G57035 312 / 3e-95 U-box domain-containing protein kinase family protein (.1) AT1G72760 288 / 3e-87 Protein kinase superfamily protein (.1) AT1G78940 286 / 2e-86 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036362 [exp] 547 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 545 / 0 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10027490 [exp] 441 / 1e-144 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10014771 [exp] 418 / 1e-140 AT2G45910 212 / 3e-61 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 410 / 8e-133 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 392 / 3e-125 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 389 / 1e-124 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 383 / 1e-121 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10039245 [exp] 357 / 2e-111 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160300 [exp] 796 / 0 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 536 / 4e-180 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 527 / 2e-176 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 456 / 5e-151 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 427 / 6e-139 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.009G030400 [exp] 379 / 4e-120 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 351 / 1e-109 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 299 / 7e-91 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G225300 [exp] 290 / 4e-87 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 288 / 9e-87 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10036363 pacid=23174529 polypeptide=Lus10036363 locus=Lus10036363.g ID=Lus10036363.BGIv1.0 annot-version=v1.0 ATGGCGTCTACCCAGGACTCGGATTTAGAGTTTTCTGTTGATGATGATATCGTGTATGTCGCAGTTGGGAAAGATGTAGAAGAAAGCAAGTTGAATCTTT TGTGGGCACTCTCCAATTTCCCAGCGGGAACTCGATTCTGCATTCTTCATGTCCATCAGCCTGCTAGAACTATCCCCCTTGTTGGTGGAAATTTCTCAGC CAGCAGACTTGAGCAGCATGAAGTCGCCGAGTTTCACGAGCTCGAAAGGAAAATCATGCTCAAGATTCTGGACGAGTATCTTCTCCTATGCCACCGGGAG ACACAGGTACAAGCAGAAAAGATGATTGTGGAAATGGACGAGGTGGGGAACGGGATTGTGGAGCTTGTATACCGGAACGGTATAAAGAAGCTTGTCATGG GAGCAGCAGCTGACAAATACTACTCACAGGAAGGTGGTATCGATTGCAGTTCGACGGAATCTTTTGTTCGTGAATTTTCTGAGAACAATGAACTTGAGAT CTGTGAAGTTCCTTCGACAGAGGAAAGAGATGACACTCAAGAACTATATTACTTATTGGATCAAGCAATGCTGGAGGCTGAATATCTGAAACAAGAAACT CTTGAAGAGTCTCATAAGCGCCGAGCAGCTGAAAAGATAGCCTTGAATGCCATCCGCCGGGCAAACGCCTTGGAAACATTGTACTCTAAGGAACTGAAAC AGAGGAGAGAAACAGAGGAAATGCTGAAGAAAGAAAAAGAAGATCATCGAACGTCAAAGAACCAACGAGACGAAGAGCGTTTGGTTTCAATTGGTAAGAT AGTGTTCCTGGAGATCCAAGTTGGAACCCTCGAAAATGAAGTGAAAGAGTTGCAAGATACAGTTTTCGCAACTGCGAACCAATGCAAAGAGTACGAGGAA GAAAGGAATGAGTTGCAGGAAGAGCATCAAAGGGCTCTCAGTTTGGCTGAGGAACTGCAGACGAAGCTAGCGGACCATGCCTCGAGCCTGCAACTTCTTA TGATGTTCTCGTTGGCTGAGATTGATGAAGCTACCGACGGCTTTAACCAATCGAATAAGATTGGGGAGGGTGGCTATGGAACGATTTACAAAGGCTTCAT TTGCCATACTGCCGTGGCTGTCAAAGTGCTCAACCGAGGTAGCATGCAAGGGGCTGCAGAGTTTCAGCAAGAGGTCAATGTGTTGGGAAAGCTGAGACAT CCAAACTTGGTTACGCTAATTGGAGCCTGCCAAGAATCCTGCGCTCTAATCTATGAGTATATGCCTAATGGAAACCTCGAAGAACGACTAAACTGCAAGG ACGACACTCCCCCATTACCGTGGCAAGCTCGAATCCGTCTAGCTACAGAGTTGTGCTCTGTCCTCGTATTCCTCCACTCTAGCAAGCCCAACAGCATCGT CCACGGCGACCTAAAACCCTCAAACATTCTCCTGGACGCTAACCTCGGGTGTAAACTCAGCGACTTTGGAATCTGCCGTGCACTTCCCGGTTCAGGTAAC AACGCAGCAGAAGCCACATTATATCACGTAACTGACCCGAAGGGCACTTTCCACTACCTGGACCCACATTTCCTTACAACGGGGGAGTTGTCTCCGAAAT CCGATACATACTCGTTCGGGATCATACTGTTGCAGCTATTGACGGGGAAATCGGCAGTAGGAATCTCAAACGAGACTAGGTTGGCCATGAATGAGGGCAT CCTGAGTTTCTTGGATCAGTCAGCCGGAGATTGGCCTTTCTTGCAAGCCAAGCAACTGGCTTGTCTGGGTCTGGCGTGTTGTGACATGGAAAGAAGCAGA CGGCCTGACCTTGCTTCGGACGTGTGGAGGGTTCTTGAACGAATGAGGGGTTTGTGGGTGAGCTCATCAGTTTCATGGTCTGGTTCCCGCAGGCAACCTC CTGCTCACTTCTTTTGTCCGATTTTGCAGGAAGTGATGGTGGATCCCCATGTCGCGGCTGATGGGTTCACTTACGAGGTGGAGGCTTTGAGAGGGTGGTT GGAAGGTGGCCATGTCACTTCACCGATGACTAACCTCGAACTCGACAACTTCGACCTAGTCCCTAATCGCTCTCTGCGTTCTGCAATCCAAGAGTGGCTT CAATGA
AA sequence Show only first row Show all	>Lus10036363 pacid=23174529 polypeptide=Lus10036363 locus=Lus10036363.g ID=Lus10036363.BGIv1.0 annot-version=v1.0 MASTQDSDLEFSVDDDIVYVAVGKDVEESKLNLLWALSNFPAGTRFCILHVHQPARTIPLVGGNFSASRLEQHEVAEFHELERKIMLKILDEYLLLCHRE TQVQAEKMIVEMDEVGNGIVELVYRNGIKKLVMGAAADKYYSQEGGIDCSSTESFVREFSENNELEICEVPSTEERDDTQELYYLLDQAMLEAEYLKQET LEESHKRRAAEKIALNAIRRANALETLYSKELKQRRETEEMLKKEKEDHRTSKNQRDEERLVSIGKIVFLEIQVGTLENEVKELQDTVFATANQCKEYEE ERNELQEEHQRALSLAEELQTKLADHASSLQLLMMFSLAEIDEATDGFNQSNKIGEGGYGTIYKGFICHTAVAVKVLNRGSMQGAAEFQQEVNVLGKLRH PNLVTLIGACQESCALIYEYMPNGNLEERLNCKDDTPPLPWQARIRLATELCSVLVFLHSSKPNSIVHGDLKPSNILLDANLGCKLSDFGICRALPGSGN NAAEATLYHVTDPKGTFHYLDPHFLTTGELSPKSDTYSFGIILLQLLTGKSAVGISNETRLAMNEGILSFLDQSAGDWPFLQAKQLACLGLACCDMERSR RPDLASDVWRVLERMRGLWVSSSVSWSGSRRQPPAHFFCPILQEVMVDPHVAADGFTYEVEALRGWLEGGHVTSPMTNLELDNFDLVPNRSLRSAIQEWL Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	0	1
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	1.0	0.9085
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	2.0	0.8832
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	2.0	0.8866
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	3.0	0.8849
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	3.9	0.8566
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	6.0	0.8550
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	6.3	0.8497
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	7.9	0.8058
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	8.5	0.8189
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10024973 [exp]	8.9	0.8171

Compare expression of checked genes

Lus10036363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.