Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01650 588 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 563 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 334 / 1e-109 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 297 / 1e-95 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT2G30290 47 / 2e-05 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G03120 45 / 5e-05 ATSPP signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014769 [exp] 837 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10017796 [exp] 696 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10018834 [exp] 593 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10031104 [exp] 583 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10024653 [exp] 524 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 522 / 6e-180 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10001154 [exp] 336 / 2e-110 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 300 / 3e-98 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 173 / 2e-50 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160500 [exp] 649 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 638 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.003G128500 [exp] 596 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 573 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G232200 [exp] 326 / 1e-106 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 315 / 2e-102 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.005G111100 [exp] 41 / 0.001 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10036364 pacid=23174654 polypeptide=Lus10036364 locus=Lus10036364.g ID=Lus10036364.BGIv1.0 annot-version=v1.0 ATGGGAAAGTTGACATCTTTATGGGTATTTGTGGCTTTGTTGACTCTGATGAGTCCGGGTCTTGCTTCAGCTGGTGACATAGTTCATCCAGACACTAATG CTCCCAGTAAGCCTGGCTGCGACAACAACTTTGTTCTGGTAAAGATCCCCACTTGGGTTGATGGAGTAGAAGATGTTGAGTATGTTGGTGTTGGTGCACG TTTTGGCCCGACCTTAGAATCAAAAGAGAAACATGCTAACAAATCTAGGCTTGCTTTAGCAGACCCTCCTGATTGTTGCAGCACACCCCGGAATAAGCTT ACAGGGGAGGTCATTATGGTGCACCGAGGAAACTGCAGCTTCACAACAAAGTCTAATATCGCTGAGGCAGCTGGCGCTTCTGCTATTCTGATTATAAACT ATCGAACTGAGCTATTCAAGATGGTTTGTGAAGAAAATGAAACTGATTTGAGTATAGGAATCCCAGCTGTCATGCTTCCACAAGATGCTGGAACTGCACT GGAAACTTACATGAGCAGCAATGATTCAGTTCTTCTGCAGATTTATTCCCCACGGAGGCCGTTAGTTGATGTTGCAGAAGTATTTCTATGGCTTATGGCT GTCAGCATAATCCTATGTGCTTCTTTTTGGTCTGCCTGGAGTGCAAGAGAGGCTGCAATAGAGCAAGAAAAGCTCTTAAAGGATGGTCTAGATGTTCATC AGGATGGCGCTTGTTCTACCAGCATAGTTAACATCAACGTGATTTCGGCTGTTCTCTTTGTTGTAGTTGCTTCATGTTTCTTAGTTATGCTCTACAAACT TATGTCTTTCTGGTTTATCGAGATTTTGGTAGTTCTCTTCTGCATCGGCGGTGTTGAGCTGATTGATGCTGACTGCAGCTTCAGATGCTTTCAACATGCT GCCGAATCGTGTGTCAAAGTCCCGTTCTTTGGAGCTGTCTCTTATCTGACATTAATGGTCTCTCCCTTGTGCATAGCCTTTACAGTTGTTTGGGCAGTAT ATCGCCGAGTTTCATTTGCTTGGATAGGTCAAGATATTCTTGGTATTGCACTGATCATTACCGTTCTTCAGATTGTTCACGTCCCGAACCTGAAGGTAGC TCGTGGTGATAAGAGTGGCGAGGACGGGATACCAATGCTACTTAAAATCCCTAGGATGTTCGATCCGTGGGGCGGATACAGCATCATCGGCTTCGGTGAC ATCATCTTACCCGGACTTGTTGTCGCTTTTGCATTGAGATACGACTGGCTGGCGAAGAAGACTACGAGAACAGGATACTTCATATGGGCAATGACAGCAT ATGGCTTCGGTATTAACAACAGATTATTGGAACCGAGTTGA
AA sequence Show only first row Show all	>Lus10036364 pacid=23174654 polypeptide=Lus10036364 locus=Lus10036364.g ID=Lus10036364.BGIv1.0 annot-version=v1.0 MGKLTSLWVFVALLTLMSPGLASAGDIVHPDTNAPSKPGCDNNFVLVKIPTWVDGVEDVEYVGVGARFGPTLESKEKHANKSRLALADPPDCCSTPRNKL TGEVIMVHRGNCSFTTKSNIAEAAGASAILIINYRTELFKMVCEENETDLSIGIPAVMLPQDAGTALETYMSSNDSVLLQIYSPRRPLVDVAEVFLWLMA VSIILCASFWSAWSAREAAIEQEKLLKDGLDVHQDGACSTSIVNINVISAVLFVVVASCFLVMLYKLMSFWFIEILVVLFCIGGVELIDADCSFRCFQHA AESCVKVPFFGAVSYLTLMVSPLCIAFTVVWAVYRRVSFAWIGQDILGIALIITVLQIVHVPNLKVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGD IILPGLVVAFALRYDWLAKKTTRTGYFIWAMTAYGFGINNRLLEPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	0	1
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	1.7	0.9145
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	2.0	0.9093
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10026790 [exp]	5.5	0.9002
AT5G61200			unknown protein		Lus10003464 [exp]	7.9	0.9089
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	8.8	0.8682
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	10.1	0.8960
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	14.8	0.8865
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	16.7	0.8944
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10014150 [exp]	17.6	0.8381
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	17.7	0.9084

Compare expression of checked genes

Lus10036364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.