Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45950 384 / 1e-133 ASK20 SKP1-like 20 (.1.2) AT3G61415 342 / 4e-117 ASK21 SKP1-like 21 (.1.2) AT3G21850 88 / 5e-21 ASK9 SKP1-like 9 (.1) AT2G03170 79 / 7e-18 ASK14 SKP1-like 14 (.1) AT4G34210 78 / 2e-17 ASK11 SKP1-like 11 (.1) AT1G75950 77 / 4e-17 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT2G25700 76 / 1e-16 ASK3 SKP1-like 3 (.1) AT5G42190 76 / 2e-16 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT1G20140 76 / 2e-16 ASK4 SKP1-like 4 (.1) AT4G34470 75 / 3e-16 ASK12 SKP1-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014770 [exp] 366 / 1e-126 AT3G61415 468 / 2e-166 SKP1-like 21 (.1.2) Lus10017795 [exp] 333 / 7e-114 AT3G61415 445 / 2e-157 SKP1-like 21 (.1.2) Lus10018833 [exp] 340 / 1e-109 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10019794 [exp] 82 / 2e-18 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10013575 [exp] 80 / 7e-18 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017281 [exp] 79 / 1e-17 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 79 / 1e-17 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10005610 [exp] 79 / 1e-17 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10019432 [exp] 76 / 1e-16 AT1G20140 186 / 2e-61 SKP1-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085400 [exp] 345 / 2e-118 AT3G61415 406 / 5e-142 SKP1-like 21 (.1.2) Potri.002G160600 [exp] 336 / 7e-115 AT3G61415 426 / 5e-150 SKP1-like 21 (.1.2) Potri.015G146500 [exp] 330 / 6e-113 AT2G45950 350 / 3e-120 SKP1-like 20 (.1.2) Potri.012G143500 [exp] 321 / 5e-109 AT3G61415 394 / 4e-137 SKP1-like 21 (.1.2) Potri.002G018700 [exp] 82 / 7e-19 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 82 / 9e-19 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 78 / 2e-17 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 78 / 3e-17 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 75 / 3e-16 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G086900 [exp] 49 / 5e-07 AT4G34210 130 / 1e-39 SKP1-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10036365 pacid=23174454 polypeptide=Lus10036365 locus=Lus10036365.g ID=Lus10036365.BGIv1.0 annot-version=v1.0 ATGTCAGAAGTTGACATGGCGGTCATAAAACCTGAGATGCTGAAGTCATATATTTGGCTTCAGACTGCGGATGGTTCAATTCAACAAGTAGAACAAGAGG TTGCCATGTTTTGTCCCATGATATGTCATGAAATAATACAGAAGGGCATGGGGACATCAAAGAATTACGCTATATCTCTTCCACAACGCGTCAGTCCTGC CATGCTGAGCCTCATTCTTGATTATTGCAGGTTTCATCAAGTACCAGGTCGATCCAATAAGGAACGAAAGTCTTATGATGAAAGGTTCATCCGGATGGAT ACTAAAAGGCTTTGTGAGTTGACATCAGCAGCTGATAGTCTCCAGCTTAAGCCTTTGGTTGATCTCACTAGTCGTGCATTGGCACGGATTATAGAGGGGA AAACGCCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTTTGAGAAATACAACGGATGATCCTCGGAT TAGACTTTTAAATAGATTGTATGCAAAGAAGAGGAAAGAGCTGAAAGAGAGGCAGAAACAAAAGGATTCAAATGGCTCGGGCTATTTAGGCCATAGTACT GCTGCCGATAATGAATCACATTCTACGATAAGCGAAACATCGAAATTGCAAGACATAGAAGATGACATTTTTTATCATAAAGAAGAGCTTGATGATGTTG ATATAGACGATGAGATTGACCCGGCATTGAAGGAGAAAATTGACAGAGAGGTGGAAGATTTTGCACGGAGATTAAGTTCAGACTGGCCTGAACGAATGCA GGAGCTTCTATGTTTGGGTCAAGAGAGGAACCCTCTTCACTTGTCCATCAATGGCAATGGTAGCTTGAGAAAACACACAAGTATGTGCTCTTTAACTCCA TCCTATTATCATAGTTATATTGTTCTAAATCTTGTCTCGGGGAGATCGATTTGTTGA
AA sequence Show only first row Show all	>Lus10036365 pacid=23174454 polypeptide=Lus10036365 locus=Lus10036365.g ID=Lus10036365.BGIv1.0 annot-version=v1.0 MSEVDMAVIKPEMLKSYIWLQTADGSIQQVEQEVAMFCPMICHEIIQKGMGTSKNYAISLPQRVSPAMLSLILDYCRFHQVPGRSNKERKSYDERFIRMD TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNTTDDPRIRLLNRLYAKKRKELKERQKQKDSNGSGYLGHST AADNESHSTISETSKLQDIEDDIFYHKEELDDVDIDDEIDPALKEKIDREVEDFARRLSSDWPERMQELLCLGQERNPLHLSINGNGSLRKHTSMCSLTP SYYHSYIVLNLVSGRSIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	0	1
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	3.5	0.8532
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10037127 [exp]	5.5	0.8333
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	5.5	0.8618
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	5.7	0.8650
AT2G36360			Galactose oxidase/kelch repeat...		Lus10043424 [exp]	9.4	0.8281
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10008565 [exp]	9.5	0.8131
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	10.4	0.7822
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	11.6	0.8215
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	12.4	0.8303
					Lus10024697 [exp]	13.0	0.8111

Compare expression of checked genes

Lus10036365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.