Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00370 811 / 0 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G29650 689 / 0 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT2G38060 331 / 4e-107 PHT4;2 phosphate transporter 4;2 (.1) AT5G20380 312 / 1e-99 PHT4;5 phosphate transporter 4;5 (.1) AT3G46980 305 / 7e-97 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT5G44370 246 / 2e-75 PHT4;6 phosphate transporter 4;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014769 [exp] 752 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10040686 [exp] 697 / 0 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10018218 [exp] 692 / 0 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10035532 [exp] 306 / 4e-97 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10040703 [exp] 305 / 8e-97 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018203 [exp] 307 / 5e-93 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10027761 [exp] 281 / 5e-89 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10038110 [exp] 275 / 6e-85 AT5G20380 662 / 0.0 phosphate transporter 4;5 (.1) Lus10026551 [exp] 266 / 9e-83 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085700 [exp] 830 / 0 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.009G043800 [exp] 726 / 0 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.001G249800 [exp] 721 / 0 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.016G111000 [exp] 336 / 8e-109 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.006G062300 [exp] 325 / 2e-104 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.018G121600 [exp] 318 / 8e-102 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.001G248200 [exp] 307 / 2e-97 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.009G168200 [exp] 235 / 3e-71 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 167 / 1e-48 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10036366 pacid=23174632 polypeptide=Lus10036366 locus=Lus10036366.g ID=Lus10036366.BGIv1.0 annot-version=v1.0 ATGGCTATCGGTGGTTTGATTTCTCACCGGCACTTGGGTTCTTTCGTCGGCTCCGGGAAAAGATGCTATTCAGATGTACGGAATGCACATGCTACAACCT GCTACGGCACCAGGATGGTTAAACAGCTCGTTCCTGTGTTCTCAACATCTTATGTTCGTAGTCAGGTTAATTGTCACTTTAATGGAGCGACCTTCAAACC ATCTGCAAGTCCGGTTTATAAAAGAGACAGAGGGAAATGGGAGCATTTGGGGTCCTCTTCAAAGGTCAACAGGACCTGTGCTTACTACAAATCTGAGGAG TACGACATACCACCGGTGGAAGCAGCTATCGACTCGCTGAACTCAGCAGATGGTTCTGTCGAGGCTGCTTTAGTTGAGCAAGCTTCCCCATGGTGGCAGC AGCTTCCGAAGAGATGGGTGGTCGTAATGCTGTGTTTTACAGCATTTCTGTTATGCAACATGGACCGGGTAAACATGAGCATTGCCATACTTCCAATGTC GCAAGAATTTGGTTGGAGTAGTACAACAGTTGGTTTAATCCAGTCCTCTTTTTTCTGGGGCTACCTTATGACTCAGATTGTTGGAGGCATTTGGGCTGAT AAAATTGGCGGAAAGCTAGTATTGGGTTTTGGAGTAGTGTGGTGGTCAATCGCTACCATTCTGACTCCAATTGCCGCCAAAGTTGGACTCCCATTTCTGC TTATGATGCGAGCTTTTATGGGAATTGGTGAGGGTGTCGCAATGCCGGCTATGAACAACATTCTGTCAAAGTGGATTCCAGTGTCAGAGAGAAGTAGAGC TCTAGCTCTTGTTTATAGTGGGATGTATATGGGTTCCGTGACAGGATTGGCTCTCTCTCCTATTCTAATTCAGAAATTTGGGTGGCCATCTGTCTTCTAT TCGTTTGGCTCCCTTGGAAGCATCTGGTTTGTATTGTGGATTAAAAAGGCATATAGCTCACCGGATCTTGACCCAGAGCTTAGTCCACAGGAGAAGAAGC TTATCATGGGAGGTAGCACATCGAAGGAACCCGTCTCAGTCATTCCTTGGAAGTTGATTTTATCAAAACCACCCGTTTGGGCACTTATTGTTTCTCACTT CTGCCATAATTGGGGAACTTTTATACTTTTGACGTGGATGCCTACTTACTACAACCAGGTTTTAAAGTTTAACCTCACTGAATCCGGACTGCTCTGCGTC TTGCCATGGCTGACAATGGCTGCTTTTGCCAACCTAGGAGGATGGATTGCTGACACACTTGTTAGCAAAGGCGTTTCCATAACAAATGTCAGAAAGGCAA GGACTAGAATTCTACTCGTACTCTTAATTCTTTTTCTTTCCTCATCTTCAGAAACTAAACTGATGGTCTTCTCTATTGCAACTTGGACGATATCACAGAT CATGCAATCAATTGGGTTTTTAGGACCTGCATTTTTTCTCACGCAGCTGAGTAAAGTCAAGACCCCAGCAATGGCAGTATTGTGCATGGCTTGCAGTCAG GGATCGGATGCGTTCTCCCAGTCTGGTCTCTACTCCAATCACCAAGACATTGGCCCACGCTATGCTGGAGTCCTGTTAGGACTATCAAACACTGCTGGAG TGCTTGCTGGTGTCTTTGGCACTGCAGCAACTGGCTACATTCTCCAAAGAGGTTCGTGGGATGATGTGTTCAAGGTAGCTGTCGTTCTGTACGTAATCGG AACAGTGGTTTGGAACTTGTTTGCGACTGGGGGAAGAGTCCTTGACTGA
AA sequence Show only first row Show all	>Lus10036366 pacid=23174632 polypeptide=Lus10036366 locus=Lus10036366.g ID=Lus10036366.BGIv1.0 annot-version=v1.0 MAIGGLISHRHLGSFVGSGKRCYSDVRNAHATTCYGTRMVKQLVPVFSTSYVRSQVNCHFNGATFKPSASPVYKRDRGKWEHLGSSSKVNRTCAYYKSEE YDIPPVEAAIDSLNSADGSVEAALVEQASPWWQQLPKRWVVVMLCFTAFLLCNMDRVNMSIAILPMSQEFGWSSTTVGLIQSSFFWGYLMTQIVGGIWAD KIGGKLVLGFGVVWWSIATILTPIAAKVGLPFLLMMRAFMGIGEGVAMPAMNNILSKWIPVSERSRALALVYSGMYMGSVTGLALSPILIQKFGWPSVFY SFGSLGSIWFVLWIKKAYSSPDLDPELSPQEKKLIMGGSTSKEPVSVIPWKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCV LPWLTMAAFANLGGWIADTLVSKGVSITNVRKARTRILLVLLILFLSSSSETKLMVFSIATWTISQIMQSIGFLGPAFFLTQLSKVKTPAMAVLCMACSQ GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYVIGTVVWNLFATGGRVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	0	1
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	1.4	0.9268
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	4.0	0.9281
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	6.0	0.8984
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	6.2	0.8922
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	6.5	0.9172
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	6.5	0.9000
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	7.2	0.9147
					Lus10043150 [exp]	8.9	0.8677
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	10.2	0.9135
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	10.6	0.8919

Compare expression of checked genes

Lus10036366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.