Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29910 190 / 1e-53 EMB2798, ORC5, ATORC5 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1) AT2G45980 166 / 9e-48 ATI1 ATG8-interacting protein 1, unknown protein AT4G00355 167 / 1e-47 ATI2 ATG8-interacting protein 2, unknown protein AT4G10080 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014767 [exp] 373 / 1e-127 AT2G45980 107 / 4e-28 ATG8-interacting protein 1, unknown protein Lus10014768 [exp] 322 / 3e-98 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086000 [exp] 284 / 5e-92 AT4G00355 200 / 4e-63 ATG8-interacting protein 2, unknown protein Potri.002G160700 [exp] 257 / 9e-82 AT4G00355 217 / 8e-70 ATG8-interacting protein 2, unknown protein Potri.014G085900 [exp] 232 / 2e-69 AT4G29910 635 / 0.0 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1) Potri.013G099200 [exp] 44 / 0.0002 AT4G13530 116 / 3e-30 unknown protein Potri.019G071300 [exp] 43 / 0.0003 AT4G10080 125 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036368 pacid=23174487 polypeptide=Lus10036368 locus=Lus10036368.g ID=Lus10036368.BGIv1.0 annot-version=v1.0 ATGGCTAATGAGCTGTCAGCAGATTACATCTGCGTTGAATGGTTGAATCGTGGTGGTATTGATTCCATCTGGCTAAACTGTAGTCTCAACCTCAAGTATA TTGTCCTGTTTCTGGATTCAGGAAGGCGCTCTACCCTTGGGATGGCAGATAACGAGGAAGGAGAGGAGAACAAGACTCGAGGGAGTGACTGGGAGGTTGT GTCACTTACAGCATCGGCATATGCAGCTGCTCCTGGCCCCAAAGAAGCTGAAATGAAGGATGATAATGACGCCCACATGAATGAAGTGGGTGAAACCGAG TCATCTTCTGCTTTGTTCATGTCTGGACACTTTGTCTTCCCGCCAAGCCAGCATGAGAACTTACCCCTGGAGCCTGATTACAGTGAGATTATGGTTGATG AATCTGCTGGTAAAAAGGTTGACTCTGGATATCATGTTGAAGAAGGGAACATATCTGGTGGAAAAGATGACGGGACTTGGTCATTGAAGGAGCTAAACGT CTCTGAAGATTACCCAGATGTGCAGTTCTTTGAGTCCGGCAGTAATCAGCTTACTGTCTCTGGTAAAGAGTTCGAAGAAAGTGAGAAATTTCCAAATTTA CATCTAATTGACTCGGAAGAAAGTATATACAGTGCAGCTGCGTTTAGTTCTTTGCACAGTGAGACAGCAGCGCTTGGGGGTTCAACTGTATATGGCGAGA CTTTAGGCACTCATGAATCTGTTGATCAGGGCTCACATCTTCCTGTTGACGACTCTCTTTCTCCAGACCAAGTTACAGAAGGCGGCAAGTATGAGGGCCC TGAACTTCCATGTGAAGCTTGGTGGAAAAGAAGGGCTGTATCTCTGTACGGTCATGCTAAAGAGACAAATACGTTTTGGTCAATCTTTGTTGCTGCAGCT TTTATGGGCCTTGTGATTCTTGGCCAGCGCTGGCAACAAGAAAGGTGGAAAGTTCTGCAGCTTAAGTGGCAGACCACTCTAAACAGTGAGGTGCAGTTCG CCAGATATGTATTATTCAAGTACATAGAGCCTATTCCTGTGTTTTTCCCTGAATATACAGAAGATCTTCCCCGAATACTGATGAGGAATCAATCAAACCA GAAGCTATATGGTTGGTTTCTTGACATTGTACTGAGGCCATTCTGTAGAGTGACCAGGCCACTCGATGAATTAAGTCCAGTCTTTTCATCTTTGTTTCAA CAGTATTCCGAACCACTTAGCGACACAAGTACCTTACCCAGTGATGGCATGAAGAGAAGACTGTTTATTAGCTTTCAGCATTGCATTTCGCCTTATTTGA ATAATATATTTTGGGGGCCATCTAAATCTTTCTTAGGAGTTTATTCCGGGAAGGATACTACCAGGGAGATAGATTTCCATATGTCCACTGCTGCTAAATA TCTTCTTATCTCAGCATTCATCGCTTCAAGAAATCCGGCTACACTGGATGCGTCTTTGTTCGATAGCACCGGTGGCTCAGATAATCGCAAGCGTAAGAGG AAGGCCTCCGAGAAGTCAAAGGAGCAAAAGGGAACTGCGGAACAGGAATTGCTTATGAAAGATCCCGGAACTTTTCCATTGAAAGGCTGCTGGCTATTTT CCAATGCATAA
AA sequence Show only first row Show all	>Lus10036368 pacid=23174487 polypeptide=Lus10036368 locus=Lus10036368.g ID=Lus10036368.BGIv1.0 annot-version=v1.0 MANELSADYICVEWLNRGGIDSIWLNCSLNLKYIVLFLDSGRRSTLGMADNEEGEENKTRGSDWEVVSLTASAYAAAPGPKEAEMKDDNDAHMNEVGETE SSSALFMSGHFVFPPSQHENLPLEPDYSEIMVDESAGKKVDSGYHVEEGNISGGKDDGTWSLKELNVSEDYPDVQFFESGSNQLTVSGKEFEESEKFPNL HLIDSEESIYSAAAFSSLHSETAALGGSTVYGETLGTHESVDQGSHLPVDDSLSPDQVTEGGKYEGPELPCEAWWKRRAVSLYGHAKETNTFWSIFVAAA FMGLVILGQRWQQERWKVLQLKWQTTLNSEVQFARYVLFKYIEPIPVFFPEYTEDLPRILMRNQSNQKLYGWFLDIVLRPFCRVTRPLDELSPVFSSLFQ QYSEPLSDTSTLPSDGMKRRLFISFQHCISPYLNNIFWGPSKSFLGVYSGKDTTREIDFHMSTAAKYLLISAFIASRNPATLDASLFDSTGGSDNRKRKR KASEKSKEQKGTAEQELLMKDPGTFPLKGCWLFSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Lus10036368 [exp]	0	1
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10024885 [exp]	1.0	0.8752
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	2.8	0.8492
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	10.4	0.8485
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	10.6	0.8247
AT5G14540			Protein of unknown function (D...		Lus10018089 [exp]	12.1	0.7663
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	12.4	0.8138
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	12.6	0.8217
AT2G24370			Protein kinase protein with ad...		Lus10009896 [exp]	12.8	0.7205
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	14.9	0.8142
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	15.6	0.8053

Compare expression of checked genes

Lus10036368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.