Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45990 435 / 2e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014766 [exp] 357 / 1e-125 AT2G45990 306 / 3e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086100 [exp] 451 / 8e-162 AT2G45990 437 / 6e-157 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036369 pacid=23174471 polypeptide=Lus10036369 locus=Lus10036369.g ID=Lus10036369.BGIv1.0 annot-version=v1.0 ATGATTGATATGCAGAGCGGGCGAGTGGCGGGTACTCGAGAATCAGCAGCTACACTTTTGTCTTCCACACAAAAGGAAGAAAGGACGAAGAAAATGGGCG ACCTTTACGCTTTGGACTTCGATGGAGTTCTCTGCGACAGCTGCGGCGAAAGCTCTGTCTCCGCCGTCAAGGCTGCCAAAGAGAGATGGCCGGATTTGTT CACCGGGGTTGACTCCGCCACTGAAGACTGGATTGTTGCTCAGATGCATACAGTGCGGCCTGTTGTGGAAACTGGCTACGAGAATTTGTTGCTCGTGAGA TTGTTACTGGAGATGAAGGTCCCCTCAATTAGGTTATCCTCGGTTGCGGAGGGACTTGCTGTTGAGGGGATATTGGAAGGTTGGTCGAAGCTCAAACCTG TCATCATGGAAGAATGGGGGGAGCAAAATAGAGATGAGCTGATAGAGCTTTTTGGAAAAGTCAGGGACGAGTGGATTGACAGTGACTTGACTACTTGGAT CGGAGCAAACAGGTTCTATCCAGGCGTTCCTGAAGCCCTGAAATTTGCTAGCTCAACAATATACATAGTAACCACCAAGCAGGGCCGGTTTGCAGATGCT TTACTAAGAGAGCTAGCCGGGGTAACAATTCCACCTGAAAGAATATATGGGTTGGGATCCGGGCCTAAAGTAGAGGTGTTGAAGCAACTTCAGAAGAGAC CAGAACACCAGGGAATGACTCTACACTTTGTGGAGGATCGACTCGCAACGCTCAAGAATGTCATCAAAGAGCCAGAATTAGATGGATGGAACTTGTATTT GGGCAACTGGGGGTACAATACACAGAAAGAGAGAGACGACGCAGAAAGCATTCGTCGGATTCAGCTTCTCCAGCTCTCCGACTTCAGCAAGAAGCTGAAA TAG
AA sequence Show only first row Show all	>Lus10036369 pacid=23174471 polypeptide=Lus10036369 locus=Lus10036369.g ID=Lus10036369.BGIv1.0 annot-version=v1.0 MIDMQSGRVAGTRESAATLLSSTQKEERTKKMGDLYALDFDGVLCDSCGESSVSAVKAAKERWPDLFTGVDSATEDWIVAQMHTVRPVVETGYENLLLVR LLLEMKVPSIRLSSVAEGLAVEGILEGWSKLKPVIMEEWGEQNRDELIELFGKVRDEWIDSDLTTWIGANRFYPGVPEALKFASSTIYIVTTKQGRFADA LLRELAGVTIPPERIYGLGSGPKVEVLKQLQKRPEHQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGNWGYNTQKERDDAESIRRIQLLQLSDFSKKLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45990			unknown protein		Lus10036369 [exp]	0	1
					Lus10024694 [exp]	1.0	0.9091
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	4.2	0.9087
AT4G02210			unknown protein		Lus10042596 [exp]	5.1	0.8832
					Lus10041093 [exp]	5.7	0.8857
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	6.2	0.8651
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	6.9	0.8810
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	7.3	0.8790
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	10.0	0.8851
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	10.8	0.8979
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	11.6	0.9013

Compare expression of checked genes

Lus10036369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.