Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61440 467 / 4e-166 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G59760 317 / 4e-106 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT2G43750 311 / 3e-104 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT4G14880 303 / 5e-102 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 288 / 2e-96 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 286 / 2e-95 ATCYSD1 cysteine synthase D1 (.1) AT3G03630 281 / 2e-92 CS26 cysteine synthase 26 (.1) AT5G28020 278 / 2e-92 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 272 / 5e-90 DES1 L-cysteine desulfhydrase 1 (.1.2) AT1G55880 97 / 1e-22 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014765 [exp] 624 / 0 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10019003 [exp] 305 / 7e-103 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 303 / 4e-102 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 303 / 4e-102 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 297 / 6e-99 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 297 / 7e-99 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10020342 [exp] 280 / 5e-92 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 260 / 6e-84 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 225 / 5e-72 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160800 [exp] 497 / 8e-178 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 483 / 2e-172 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.013G127800 [exp] 311 / 5e-104 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.005G048700 [exp] 305 / 6e-103 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 303 / 4e-102 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 302 / 6e-102 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 302 / 1e-101 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 301 / 3e-101 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.008G153300 [exp] 299 / 1e-100 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 294 / 1e-98 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10036370 pacid=23174482 polypeptide=Lus10036370 locus=Lus10036370.g ID=Lus10036370.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTGAGGAGATTCCTCGCTAAACCATCGGCCTTAATCGGCCACCAGTACCGTCAGCCCACGCTGCTCAGGGCCTTGATGTCGACGGAGGCCG CCGCAGCTGATTCCTCCCCTGATTTTGCCCAGAGACTCAGAGATCTCCCCAAACTTCTCCCCGGCACTAGAATCAAACCCACTGCTCAGCAGCTTATTGG CAAGACTCCCCTTGTTTTCCTCAACCGGGTCGCTGAAGGATGTGGAGCTTATATTGCTGTTAAGCAAGAGATGTTTCAACCAACCTCTAGCGTGAAGGAC AGACCAGCAATGGCAATGATTGAAGATGCTGAGAGGAAGAACCTGATTACCCCTGGGAAGACGACCCTGATAGAGCCAACTTCTGGCAACATGGGTATCA GCATGGCGTTTATAGCAGCAATGAAAGGGTATAAGATGGTTCTGACCATGCCATCTTACACAAGCTTGGAGAGAAGGGTGACAATGAGAGCATTCGGAGC TGAGCTTATCCTTACTGACCCAACTAAGGGAATGGGTGGAACCGTCAAGAAGGCATATGATCTCCTGGAATCCACTCCGGATGCATTCATGCCTCAACAA TTCTCAAACCCTGCCAACACAAAGATCCATTTTGAAACCACGGGTCCTGAAATTTGGGAGGATACGTTGGGCCAAGTTGATATCTTTGTGATGGGAATTG GCAGTGGAGGGACTGTTTCTGGTGTTGGGCAGTATCTGAAATCCAAGAATCCTAACGTTAAGGTTACCAGTGAAGATGCAGTGAAAATGGCAAGAAGACT TGCCGTGGAAGAGGGACTTATGGTTGGGATATCATCTGGAGCCAATACAGTTGCAGCACTTGAACTTGCTAAAAGGCCAGAGAACAAAGGGAAGCTTATT GTGACTGTGCATGCAAGCTTTGGGGAGAGGTATCTGTCGTCGGTGCTGTTCGAAGAGCTGAGGAAAGAAGCTGAGAACATGAAACCTGTTTCTGTTGATT AA
AA sequence Show only first row Show all	>Lus10036370 pacid=23174482 polypeptide=Lus10036370 locus=Lus10036370.g ID=Lus10036370.BGIv1.0 annot-version=v1.0 MAALRRFLAKPSALIGHQYRQPTLLRALMSTEAAAADSSPDFAQRLRDLPKLLPGTRIKPTAQQLIGKTPLVFLNRVAEGCGAYIAVKQEMFQPTSSVKD RPAMAMIEDAERKNLITPGKTTLIEPTSGNMGISMAFIAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPTKGMGGTVKKAYDLLESTPDAFMPQQ FSNPANTKIHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKVTSEDAVKMARRLAVEEGLMVGISSGANTVAALELAKRPENKGKLI VTVHASFGERYLSSVLFEELRKEAENMKPVSVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10036370 [exp]	0	1
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10002806 [exp]	3.9	0.9173
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10023506 [exp]	4.7	0.9101
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	6.5	0.9281
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	8.1	0.9213
AT3G04310			unknown protein		Lus10004401 [exp]	12.2	0.8961
AT5G59350			unknown protein		Lus10004955 [exp]	13.0	0.9313
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	16.2	0.9153
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	22.6	0.8944
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	25.5	0.9089
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	27.4	0.9159

Compare expression of checked genes

Lus10036370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.