Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63800 275 / 2e-95 UBC5 ubiquitin-conjugating enzyme 5 (.1) AT5G41340 275 / 3e-95 ATUBC4, UBC4 ubiquitin conjugating enzyme 4 (.1) AT2G46030 259 / 3e-89 UBC6 ubiquitin-conjugating enzyme 6 (.1) AT1G64230 91 / 4e-23 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G56150 89 / 9e-23 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT3G08690 89 / 1e-22 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT3G08700 89 / 2e-22 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT5G41700 88 / 3e-22 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 88 / 4e-22 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 86 / 2e-21 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014763 [exp] 312 / 5e-110 AT1G63800 294 / 6e-103 ubiquitin-conjugating enzyme 5 (.1) Lus10002359 [exp] 256 / 3e-87 AT1G63800 275 / 5e-95 ubiquitin-conjugating enzyme 5 (.1) Lus10032274 [exp] 250 / 1e-85 AT1G63800 278 / 5e-97 ubiquitin-conjugating enzyme 5 (.1) Lus10042136 [exp] 238 / 9e-81 AT1G63800 267 / 2e-92 ubiquitin-conjugating enzyme 5 (.1) Lus10024638 [exp] 208 / 1e-68 AT1G63800 229 / 2e-77 ubiquitin-conjugating enzyme 5 (.1) Lus10014187 [exp] 91 / 3e-23 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 91 / 3e-23 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 90 / 7e-23 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 89 / 1e-22 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086600 [exp] 293 / 1e-102 AT1G63800 283 / 8e-99 ubiquitin-conjugating enzyme 5 (.1) Potri.002G161000 [exp] 293 / 2e-102 AT1G63800 288 / 1e-100 ubiquitin-conjugating enzyme 5 (.1) Potri.001G101900 [exp] 283 / 2e-98 AT5G41340 292 / 3e-102 ubiquitin conjugating enzyme 4 (.1) Potri.003G129700 [exp] 274 / 5e-95 AT5G41340 284 / 5e-99 ubiquitin conjugating enzyme 4 (.1) Potri.015G073400 [exp] 247 / 2e-84 AT5G41340 268 / 1e-92 ubiquitin conjugating enzyme 4 (.1) Potri.019G083800 [exp] 92 / 1e-23 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.011G168200 [exp] 90 / 4e-23 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 90 / 7e-23 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 89 / 8e-23 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.006G110200 [exp] 89 / 9e-23 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10036372 pacid=23174577 polypeptide=Lus10036372 locus=Lus10036372.g ID=Lus10036372.BGIv1.0 annot-version=v1.0 ATGTCGTCTCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTATAAGGTGGAGCTGATCAATGATGGGATGCAAGAGTTCTATG TGTATTTCAATGGACCCAACGACAGTGCATACCATGGAGGAGTATGGAGAATTAGAGTTGAGCTGCCAGAGGGTTATCCCTACAAATCCCCATCAATAGG GTTTATCAATAAGATCTACCACCCAAATGTTGATGAAATGTCCGGGTCGGTTTGTTTGGATGTCATCAATCAAACTTGGAGCCCCATGTTTGAACGGAGA TGGTCTAACGAATGGAACTTATCTTCGCTAGATTTGGTGAATGTGTTTGAAGTGTTCCTTCCGCAGCTTCTCTTGTATCCTAACCCGTCAGATCCTTTGA ACGGTGAGGCTGCAGCTCTGATGATGCGTGACCGCCCGGCTTATGATTTGAGAGTTAAAGAATACTGTCAGAAGTATGCAAAGCCTGAAGATGCTGGAGC CACTGCAGAAGAAAAGGAGAGCGACGAAGACGAAATGAGTGAATATGAGTACGAATCCGAGGACGAGATGGCTGGACCAGCTCATCCTTAA
AA sequence Show only first row Show all	>Lus10036372 pacid=23174577 polypeptide=Lus10036372 locus=Lus10036372.g ID=Lus10036372.BGIv1.0 annot-version=v1.0 MSSPSKRREMDLMKLMMSDYKVELINDGMQEFYVYFNGPNDSAYHGGVWRIRVELPEGYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFERR WSNEWNLSSLDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPAYDLRVKEYCQKYAKPEDAGATAEEKESDEDEMSEYEYESEDEMAGPAHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	0	1
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	1.0	0.9853
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	1.7	0.9800
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	2.0	0.9804
AT2G39855			unknown protein		Lus10004678 [exp]	3.2	0.9786
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	3.3	0.9749
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	3.5	0.9741
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	3.7	0.9776
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	4.2	0.9785
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	4.9	0.9759
AT5G41810			unknown protein		Lus10003901 [exp]	5.3	0.9798

Compare expression of checked genes

Lus10036372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.