Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46040 231 / 7e-68 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT4G11400 218 / 7e-63 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 113 / 3e-26 GYRB3 DNA GYRASE B3 (.1) AT2G03470 86 / 2e-17 MYB ELM2 domain-containing protein (.1.2) AT1G26580 83 / 1e-16 unknown protein AT1G13880 79 / 2e-15 ELM2 domain-containing protein (.1) AT1G76510 43 / 0.0007 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 42 / 0.0009 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014762 [exp] 1063 / 0 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10007943 [exp] 197 / 1e-60 AT4G11400 50 / 3e-08 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 127 / 2e-31 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 124 / 3e-31 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10004658 [exp] 87 / 6e-18 AT1G26580 243 / 1e-74 unknown protein Lus10026655 [exp] 84 / 8e-17 AT1G26580 237 / 3e-72 unknown protein Lus10037097 [exp] 84 / 8e-17 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 83 / 2e-16 AT1G26580 253 / 1e-77 unknown protein Lus10021636 [exp] 80 / 1e-15 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086700 [exp] 419 / 8e-139 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 399 / 5e-131 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 263 / 4e-79 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 200 / 2e-58 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.017G091900 [exp] 89 / 1e-18 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 87 / 8e-18 AT1G26580 219 / 2e-65 unknown protein Potri.010G159700 [exp] 85 / 3e-17 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 76 / 4e-14 AT1G26580 280 / 3e-88 unknown protein Potri.002G003700 [exp] 44 / 0.0004 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0123 [flax] [poplar] PF01448 [flax] [poplar] ELM2 ELM2 domain
Representative CDS sequence Show only first row Show all	>Lus10036373 pacid=23174398 polypeptide=Lus10036373 locus=Lus10036373.g ID=Lus10036373.BGIv1.0 annot-version=v1.0 ATGGCAGGCTGGTCGGGGATAGAGGTAGATGAGCAAAAAACAGCGGGGATAGCGTTCCGGTGGAACGAGTTCTTGGTGAATCTGAAATCTGGAACGTCGG TCTCTCCTTCATTCGACAATTTTCTTAAACAGTTTCTGAAGGAGACTGGAAGTCTAGATTGTGTTAGGCTCTTCCCTCCTATGCTCGCCGATGGCCAAAC TTTAAATTTGCTGAAATTGTTCTTGGTTGTTTGGGAGAAAGGTGGATATAACGTTGTTTCTAAGAATAGACTCTGGGGTTCAGTTGCTGAAGAGTTTGAA TTAGACTGGAGCTTTGGACCGTATCTGAAATTAGTGCATGTTAAGTATCTGTCCAAATTAGAAAAACAACTAGAGAATCTTGTGTCTTTTGAGGATATAT TGAAAGGAATTTTATCTGAGATGAAGAAGCCGAAGTCATCTGAACTTGAATCTGAGTTGAGTCCTGGTAAGAAAGCTGATTCATCTTCTGGTGAGCAATA TTCTAGTCAATTGGACCTGAAGAGTGTAGTTGATGCGGTGGAACCAAAGAGATCGAGGAAGCGCCTCATAAAGAAAACTCGAACGGACTCTCCTCTCCGA GGAAACAACAATTGCACAGCTATCGACGAAATGATGGCATCTGGTTTAACAGGAAGCATGAAAGTTGGAGATGTTGAGGATAGCAAGAGTGTCTTTGTAG GAACAAATAGGATGAGGAAACATGGTGATAATGAGGATATTGATGACATGTTGGATCATAATGTGGTTGAGGAGTCCGTTTCTTCTCGTAAGAGAAAGCA AGAGAACGCATGTCAAATGGTAAATTGGGTTCGCAGGGTTGCCCAGAATCCTTTTGATTCTGCAGTTGAGAAATTACCCGAGAAGTCTAAGTGGAAGGCA TACGGGACTGACAAGCTGTGGAAACAGGTTTTGCTGGCTAGGGATGCATTGCTCATAAAGCGAGATGTTGTTTCAAGTCCTTCTTCCACTGGACAGGAGA ACAGGATGATGCATCCATGCATGTATGAAGATCACAACGGAACAAGTTACAATTTCAGAGATAGATCAAAAGCTAGAAGGGATTCGGTCACTGGGGGAAG ATCAGCTAAGCGGTTATTTTGCTCTGCTACTCAAAGTGATCCAGATTCTTATACACCAGGGACATATAGTGGCGATTCATCGTCTTCTGAGTGTAAACGT TTTGACCGTCCAACTAAAAAAGCAATTCCTGTTGGCCCAGCTTTCCAGGCTGACTTGCCAAAGTGGGTTGGTGTGACTTCTGAAAATGATCCACAACAAT GGTTAGGGACTCAGGTTTGGCCGCTACTGAACTTGCCAAGCAAAGATATTATTGAGAGGGACCCTATTGGGAAAGGAAGGCAAGATCCATGTGGGTGCCA TGTGCCGGCATCGGAAGAATGTGTGAGGTTTCATATCAAGGAGCGAAAGCTGAAATTGAAACGCGAATTAGGGACGGCTTACTACATCTGGGGGTTCAAC AAAATGGGCGAAGATGTCAAACTCTGCTGGACAGAAGAAGAACAGAAGAAGTTCATGGCTATTGCTACAGAGATTACTCGAGATTCGGGAAGGAAATTAA TCGACGAGGTAAGCAAGAAATTTCCGAGGAAGAGAAGGGAGGAGCTGGTGCGATATTATTTCAACGTATTCATCTTGTGGCGAAGAGCACACCAGAATCG ATTTACTCCCAACGTTATTTTCACCGAGGACGAGGCCAGTAGTGATGAAGACGATGATGATGATGATGAGTCTGGAAAGACGGTCGATGGTTCTGGGTCT CTCTTGGGTTCTGCAAAGAAGTCCAGGAAAAATGTTTGA
AA sequence Show only first row Show all	>Lus10036373 pacid=23174398 polypeptide=Lus10036373 locus=Lus10036373.g ID=Lus10036373.BGIv1.0 annot-version=v1.0 MAGWSGIEVDEQKTAGIAFRWNEFLVNLKSGTSVSPSFDNFLKQFLKETGSLDCVRLFPPMLADGQTLNLLKLFLVVWEKGGYNVVSKNRLWGSVAEEFE LDWSFGPYLKLVHVKYLSKLEKQLENLVSFEDILKGILSEMKKPKSSELESELSPGKKADSSSGEQYSSQLDLKSVVDAVEPKRSRKRLIKKTRTDSPLR GNNNCTAIDEMMASGLTGSMKVGDVEDSKSVFVGTNRMRKHGDNEDIDDMLDHNVVEESVSSRKRKQENACQMVNWVRRVAQNPFDSAVEKLPEKSKWKA YGTDKLWKQVLLARDALLIKRDVVSSPSSTGQENRMMHPCMYEDHNGTSYNFRDRSKARRDSVTGGRSAKRLFCSATQSDPDSYTPGTYSGDSSSSECKR FDRPTKKAIPVGPAFQADLPKWVGVTSENDPQQWLGTQVWPLLNLPSKDIIERDPIGKGRQDPCGCHVPASEECVRFHIKERKLKLKRELGTAYYIWGFN KMGEDVKLCWTEEEQKKFMAIATEITRDSGRKLIDEVSKKFPRKRREELVRYYFNVFILWRRAHQNRFTPNVIFTEDEASSDEDDDDDDESGKTVDGSGS LLGSAKKSRKNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10036373 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	3.2	0.8297
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	6.2	0.8032
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	7.2	0.7962
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	12.4	0.7694
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	12.6	0.7998
AT5G47400			unknown protein		Lus10004740 [exp]	15.5	0.7803
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	19.0	0.7648
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	19.7	0.7730
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	20.8	0.7574
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	23.7	0.7691

Compare expression of checked genes

Lus10036373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.