Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00350 743 / 0 MATE efflux family protein (.1) AT4G25640 592 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G47530 464 / 6e-160 MATE efflux family protein (.1) AT1G12950 461 / 6e-158 RSH2 root hair specific 2 (.1) AT5G38030 443 / 2e-151 MATE efflux family protein (.1) AT1G23300 443 / 5e-151 MATE efflux family protein (.1) AT3G26590 440 / 4e-150 MATE efflux family protein (.1) AT1G61890 399 / 5e-134 MATE efflux family protein (.1) AT3G21690 397 / 3e-133 MATE efflux family protein (.1) AT1G11670 394 / 6e-132 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014760 [exp] 891 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10027504 [exp] 663 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10039263 [exp] 652 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 632 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10042130 [exp] 457 / 5e-157 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 454 / 3e-155 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 453 / 7e-155 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 447 / 2e-153 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 447 / 1e-152 AT3G26590 686 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161200 [exp] 647 / 0 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 573 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 565 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.019G063500 [exp] 468 / 1e-160 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 443 / 2e-151 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 418 / 1e-141 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 414 / 4e-140 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.007G010200 [exp] 410 / 1e-138 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 397 / 2e-133 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 394 / 3e-132 AT3G21690 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10036374 pacid=23174501 polypeptide=Lus10036374 locus=Lus10036374.g ID=Lus10036374.BGIv1.0 annot-version=v1.0 ATGGCGGTTCTTCAATCCGAATTCTCGCCATTGTCGATTGAAGATGCCACCAAGACCACCACCGGTTCCTCTTCGTACGACGCTGACGACGACACCGCTC CTCTGGCGGATCTACACCATGCTCCTTCCAAGTTGGTGTTGGACGAAGGCGGAGATTACCCTCCCGTAAACGGCTTTCAGGATGCGAAATCCATTCTTGT TCTCGAATCCGGCAAGCTTTGGGGAATTGCTGGTCCGATTGCTTTCAACATCCTCTGCAATTATGGTGTTAATTCCTTTACCAATATTTTCGTTGGCCAT ATCGGAGACGTTGAGCTCTCCGCCGTTGCCATTTCCCTCTCCGTTATTGCAAACTTCTCTTTCGGATTCCTGCTTGGGATGGGAAGTGCATTGGAGACAC TATGCGGGCAAGCATTTGGAGCTGGGCAAGTTCATTTGCTGGGAGTTTACATGCAACGCTCCTGGCTAATCTTGCTCGGGGCTTGCTTTTTTATATTACC ACTCTATCTCTACGCCACACAAATCCTGAACCTCCTCGGAATTGAACCGGACATTGCTGATCTAGCTGGTAGATTCACAATCCAAGTGATCCCCCAAATG TTCTCCCTGGCACTCAATTTCCCTACACAGAAGTTTCTGCAGTCTCAGAGCAACGTTGGAGTTCTGGCCTGGATTGGTTTCGCAACTCTGATTGTACATA TCATGCTCCTCTATTTCTTCATCTACGTTTTCCATTGGGGGTTGACTGGTGCAGCTGCAGCTTACGACATCTCGGCTTGGGGATTGGCTTTGGCTCAGGT GGTGTATGTGGTTGGATGGTGCAAGGAAGGTTGGACCGGGTTGTCATGGTTAGCGTTCAAGGACCTCTGGGGGTTCTTGAAACTTTCTGTTGCTTCAGCC GTCATGATATGTTTGGAGATTTGGTACTTTATGGTTCTTATTGTTCTTACTGGCCACCTTGAAGATCCTGTCATTGCAGTCGGCTCCCTTTCTATCTGCA TGAACATCAATGGCTGGGAAGGGATGCTCTTCATTGGGATCAATGCAGCTATAAGTGTTCGTGTCTCAAACGAGCTTGGATCAGGACATCCGAGAGCTAC AAAGTATGCGGTAATGGTCACCTGCACCGAGTCTCTCCTCATAGGCTTACTCAGCGCAGGCGTAATTCTGGCAACCAGAGAAGATTTTGCTGTAATTTTC ACAAACAGCGTTGAGATGAGGAAAGCAGTTGCAGACTTAGCATACCTTCTCGGGATAACAATGGTCCTTAACAGCATCCAGCCAGTCATTTCAGGTACTG ATTTCTGCCAACAATATCCAGTTCAAAAGGGAGAAGCAACTAACTGCAAATTAACGAGTTATTCTGCAGGAGTTGCTGTTGGAGGAGGCTGGCAAGCTTT GGTGGCTTACATAAACTTGTTCTGTTACTATGTCGTTGGCCTTCCTCTTGGATTTTTGCTTGGCTATAAAACAAGCTTGCATGTTAAGGGCATTTGGCTG GGGATGATCTTTGGGACCTTTCTACAAACATTGATTCTTATTTACATCATCTGTAAAACCAATTGGAACAAGGAGGTTGAAGAAGCATCAGAAAAATTGA AGAGATGGGGTGCTGCAAATGAATTAATAACGTCTACTTCTGATACTGGATAA
AA sequence Show only first row Show all	>Lus10036374 pacid=23174501 polypeptide=Lus10036374 locus=Lus10036374.g ID=Lus10036374.BGIv1.0 annot-version=v1.0 MAVLQSEFSPLSIEDATKTTTGSSSYDADDDTAPLADLHHAPSKLVLDEGGDYPPVNGFQDAKSILVLESGKLWGIAGPIAFNILCNYGVNSFTNIFVGH IGDVELSAVAISLSVIANFSFGFLLGMGSALETLCGQAFGAGQVHLLGVYMQRSWLILLGACFFILPLYLYATQILNLLGIEPDIADLAGRFTIQVIPQM FSLALNFPTQKFLQSQSNVGVLAWIGFATLIVHIMLLYFFIYVFHWGLTGAAAAYDISAWGLALAQVVYVVGWCKEGWTGLSWLAFKDLWGFLKLSVASA VMICLEIWYFMVLIVLTGHLEDPVIAVGSLSICMNINGWEGMLFIGINAAISVRVSNELGSGHPRATKYAVMVTCTESLLIGLLSAGVILATREDFAVIF TNSVEMRKAVADLAYLLGITMVLNSIQPVISGTDFCQQYPVQKGEATNCKLTSYSAGVAVGGGWQALVAYINLFCYYVVGLPLGFLLGYKTSLHVKGIWL GMIFGTFLQTLILIYIICKTNWNKEVEEASEKLKRWGAANELITSTSDTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	3.3	0.9581
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031166 [exp]	3.6	0.9060
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	4.7	0.9581
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	4.9	0.8226
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	5.7	0.9478
AT2G06090			Plant self-incompatibility pro...		Lus10023196 [exp]	6.2	0.7636
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	6.6	0.9433
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	7.4	0.9395
					Lus10011637 [exp]	8.1	0.9384
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	9.2	0.9352

Compare expression of checked genes

Lus10036374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.