Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46050 426 / 2e-142 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G03380 308 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 307 / 4e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 307 / 4e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 305 / 8e-93 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06140 296 / 2e-92 MEF3 mitochondrial editing factor 3, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 299 / 4e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13880 298 / 3e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 298 / 9e-91 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 297 / 3e-90 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015225 [exp] 309 / 3e-94 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 307 / 3e-94 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 306 / 3e-94 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 304 / 3e-94 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 303 / 2e-92 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 303 / 3e-91 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 298 / 2e-90 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 299 / 6e-90 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019098 [exp] 298 / 1e-89 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087100 [exp] 626 / 0 AT2G46050 516 / 8e-178 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G021700 [exp] 313 / 2e-97 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 317 / 4e-97 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 315 / 2e-96 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 311 / 3e-95 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 309 / 1e-94 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 307 / 3e-94 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G076100 [exp] 298 / 4e-93 AT4G33170 383 / 1e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 299 / 3e-92 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G066100 [exp] 301 / 5e-92 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036375 pacid=23174478 polypeptide=Lus10036375 locus=Lus10036375.g ID=Lus10036375.BGIv1.0 annot-version=v1.0 ATGCGTCGACAACCGATTGCTTATCTATTCAAACCGCTATCGTTTCTGGTATCTACACGACTACGGTACTCGGCGACGACTCTTCCCGATCCAACACGCA ATTTCCATTCCTCGGTTTCGCTCTGCTCCGAAACCCTTAAACTTTCTGCCAAAAGGGGCTCTCTTCTTCAAGGCAAAATAGTACACGCAAAGGCAATAAA GTTGGGATTATACAATGTCATGTCTCTGCAGAACCACATATTGAATGTTTACGTCAAGTGCCAAAGTTGGCAGGATGCTCACCAACTGTTCGACGAAATG CACGTGAGAAATTTGGTGGCTTGGAATACGGTTATTTGTGGACTTGTTCCCACGTCTGCTTGCTTCGATTACTTTAGAAGGATGTTGTTTGGGAATTTCG CTCTGGATTCTATAACGATTAACGCCTTGCTCCGTGCTTGTGTGGAGCTTGATGTTATAGAAACGGGGAGGCAGTTGCATTGTTTTGTTGTAAAATTGGG ATTTGAGTTGAATTGCTTTGTTGTATGTGCTGTTGTTGATTTGTATGGAAAGTGTGGGTTGGCTGAAGAAGCAAGGTGTGCCTTTGATAGAGTATTGAAG AGAGATTTGGTGTTATGGAATGTAATGCTGTCTTGCTATGCCTTGAATCGCTTGCCAGAAGATGCTTTTCGAGTCTTTTGCTCAATGCGAGGGGAGAATC TTAGCGCGGATGGTTTCACGTTTTCTAGTCTGTTAAATTCATGCAGCGGGGCTATAGAGTCTGGTGAGTTAGGGAGACAAATTCATGGCCTGATCATAAA GCTGTCTTTCGATTCTGATGTTCTGGTGGCTAGTGGGATTATTGATACGTATGTGAAAAATGGATGCATGCTTGATGCTCGCAAGGTTTTCGACGGGATG ACTGCTAGAAATTTAGTCTCGTGGAATACAATGATTGTTGGTTACGGACAGCATGGAGAAGGGCATGCAGCTATGATGCTTCTACGCAAAATGTTGCAGG AAGATGTTTTCCCAGATGAATTAACCATCTCCAGCATCATTAGCTCATCCGTACCTGAGATCGCACAAATCCACGGGTACATGATGAAGAAAGGATTTCA AGGGTTTTCATCTGTTCTAACTTCTCTGATTGATGCATATTCCAAAAGTGGAAGATTTTCTACTGCACTTCTATGCTTTCGCTCTGCTACGGAGCCAGAC CTCGTAAGTTGGACCGCCCTGATCCATGCTTGTGGGTTTCATAATTGTCCAAGATATAGTATTGAGATGTTTGAGAAGATGATATCTGATGGTGTAAGAC CGGATCGAATTGCCTTTCTTGGTATTCTATCTGCTTGTAGTCAAGCAGGGTTAGTGAATGAGGGAATTCATTACTTTAACCTGATGGTCAACCAGTATCA GATTATCCCAGGTAGAGAACACCACAGTTGTCTGGTAGACCTTCTTGGGCGAGCTGGTTTCCTGGACGATGCATTTAAGATTTTGAAATCAATTCCGTTT GAACATGGGCCAGATTCGTGGGGTGCTTTCCTTTGTGCTTGCAATATCCATGGAGATTTAGGGTTAGCTAAATCAGCTGCAGAAATGCTTTTCAAATTGG AGCCAAATGATCCAGTTAGCTATGCTCTTATACCCAACATGTATGCTTCTGGCGGTCAGTGGAGTGGAGGGGGAAAGATAAGCAAAACTTCTAAAGTGAA ATGTGAGGGATGTAACGCCAATTTCTATCAGCAAATTCCCCTACTTTGCGAACATCCGGATCTGAGTTGTTCTTGTTGCTTACAATTTTGCAGCTTTGAA GTGGCAATGGAGTTTTGGCTGGCAAGCTGTCAGCTTTTGACAAAAACCTTGGAGCAGGTACGCCAGTTCACCGACTCCTTTTGA
AA sequence Show only first row Show all	>Lus10036375 pacid=23174478 polypeptide=Lus10036375 locus=Lus10036375.g ID=Lus10036375.BGIv1.0 annot-version=v1.0 MRRQPIAYLFKPLSFLVSTRLRYSATTLPDPTRNFHSSVSLCSETLKLSAKRGSLLQGKIVHAKAIKLGLYNVMSLQNHILNVYVKCQSWQDAHQLFDEM HVRNLVAWNTVICGLVPTSACFDYFRRMLFGNFALDSITINALLRACVELDVIETGRQLHCFVVKLGFELNCFVVCAVVDLYGKCGLAEEARCAFDRVLK RDLVLWNVMLSCYALNRLPEDAFRVFCSMRGENLSADGFTFSSLLNSCSGAIESGELGRQIHGLIIKLSFDSDVLVASGIIDTYVKNGCMLDARKVFDGM TARNLVSWNTMIVGYGQHGEGHAAMMLLRKMLQEDVFPDELTISSIISSSVPEIAQIHGYMMKKGFQGFSSVLTSLIDAYSKSGRFSTALLCFRSATEPD LVSWTALIHACGFHNCPRYSIEMFEKMISDGVRPDRIAFLGILSACSQAGLVNEGIHYFNLMVNQYQIIPGREHHSCLVDLLGRAGFLDDAFKILKSIPF EHGPDSWGAFLCACNIHGDLGLAKSAAEMLFKLEPNDPVSYALIPNMYASGGQWSGGGKISKTSKVKCEGCNANFYQQIPLLCEHPDLSCSCCLQFCSFE VAMEFWLASCQLLTKTLEQVRQFTDSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	0	1
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	2.4	0.9166
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	2.4	0.9063
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	4.6	0.8888
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	5.7	0.8925
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	6.3	0.9091
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	7.2	0.8692
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	9.2	0.8913
AT1G71060			Tetratricopeptide repeat (TPR)...		Lus10001633 [exp]	9.5	0.8657
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10035156 [exp]	12.6	0.8132
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	12.7	0.8874

Compare expression of checked genes

Lus10036375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.