Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00330 441 / 1e-153 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 363 / 2e-122 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT2G11520 313 / 3e-102 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G79620 221 / 5e-64 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 219 / 4e-63 Leucine-rich repeat protein kinase family protein (.1) AT5G02070 212 / 3e-62 Protein kinase family protein (.1) AT3G24540 208 / 6e-62 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G32710 205 / 7e-62 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G79680 213 / 8e-62 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT4G39110 214 / 1e-61 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014760 [exp] 716 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10018828 [exp] 561 / 0 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 557 / 0 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 374 / 2e-126 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 373 / 4e-120 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10041796 [exp] 334 / 2e-112 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 335 / 2e-110 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 317 / 6e-103 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 278 / 4e-89 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087200 [exp] 527 / 0 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 525 / 0 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 369 / 1e-124 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.018G124600 [exp] 334 / 2e-110 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.006G064200 [exp] 332 / 1e-109 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.016G144100 [exp] 235 / 7e-69 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 231 / 1e-67 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G032100 [exp] 218 / 5e-67 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 215 / 6e-66 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G090200 [exp] 221 / 9e-66 AT5G02070 783 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10036376 pacid=23174671 polypeptide=Lus10036376 locus=Lus10036376.g ID=Lus10036376.BGIv1.0 annot-version=v1.0 ATGAAAAGTCCATACAGTGGCCGGAGCTCTAGCTCCGGATCACGTTCCTCCACCGCTGCAAGCCTCCTCCCTCCTTACTCTCCCGCCTACTCCCAACCAT CCGCCGTCAAGAAGAAACGGAGTCCTGCTGCCCAGGCTGTTAGATCAGTTGTTGGAATATTCTCGTCTTGCTTGACTCCACCAGAGCCTGAAGGCTTTAG GAGCTTTGCTGACTCTGATGACGCTAAATCTCGTTCTGTTACGTCCGATGCTTCAGGACTCAGTGGAGGAAAGAGACGGGGCTCAACGCATATTAAGCAA GGGCCTGGTAGTATGAAATTCACAATTGAAGAACTCTACAGAGCCACAAAGCAATTCTCGCCTTCCTTTAAGATCGGTCAAGGCGGTTTCGGAACTGTCT ACAAAGGGAAACTTGACGATGGAACTGTTGTTGCCATCAAACGTGCCAAGAAGCAGAGCGTGTATGATAAGCATTTAGGAATGGAGTTTCTAAGCGAAGT TAGGACGCTGGAACAAATAGAGCATTTGAGTTTAGTGAAGTTCTTTGGGTATTTACAGCATGAAGATGAAAAGATTCTCGTTGTTGAATATGTCCCCAAT GGAACTCTCAGGGAGCATCTGGATTGTACTCATGGAAGCGCTCTTGACCTCTCAGTCCGCCTAGATATTGCCATTGATGTAGCTCATGCAATCACTTATC TTCACATGTACACAGATCATCCAATTATTCACAGGGACATAAAGTCATCCAATATCCTCTTAACCGACAAATGTCGAGCCAAGGTCGCTGATTTCGGGTT CGCTAGACTGGCAGCTGATACCGAATCAGGTGCCACTCACGTTTCCACCCAAGTAAAAGGAACAGCAGGTTACTTGGACCCAGAATACCTCCAGACTTAT CAGCTTACCGAGAAGAGTGATGTCTATTCATTTGGCGTCCTTCTCGTCGAGCTTGTAAGTGGCAGGCGCCCTGTCGAACCCAAACGAGATCCCAAGGAGC GTATCACGGCGAGATGGGCGATGAAGAAGTTCAGCGAAGGCAGTGCAAGTTCGATATTGGACCCAAAGTTGGAACACAATGATGCGAATCACTTGGTGCT CGAAAAGGTTCTAGAGCTAGCACTGTTGCAGTGTCTGGCACCTCGCAGACAGAACCGGCCAGCTATGAGGAAGTGTGCGGAGATCCTGTGGAGCATTCGA AAGGATTACAAAGAACTCTCAGCGCTCGAGACACCTTCACTACTTTCTTGGAACTCGCGAGGGAGCTCTGAATAA
AA sequence Show only first row Show all	>Lus10036376 pacid=23174671 polypeptide=Lus10036376 locus=Lus10036376.g ID=Lus10036376.BGIv1.0 annot-version=v1.0 MKSPYSGRSSSSGSRSSTAASLLPPYSPAYSQPSAVKKKRSPAAQAVRSVVGIFSSCLTPPEPEGFRSFADSDDAKSRSVTSDASGLSGGKRRGSTHIKQ GPGSMKFTIEELYRATKQFSPSFKIGQGGFGTVYKGKLDDGTVVAIKRAKKQSVYDKHLGMEFLSEVRTLEQIEHLSLVKFFGYLQHEDEKILVVEYVPN GTLREHLDCTHGSALDLSVRLDIAIDVAHAITYLHMYTDHPIIHRDIKSSNILLTDKCRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLQTY QLTEKSDVYSFGVLLVELVSGRRPVEPKRDPKERITARWAMKKFSEGSASSILDPKLEHNDANHLVLEKVLELALLQCLAPRRQNRPAMRKCAEILWSIR KDYKELSALETPSLLSWNSRGSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	0	1
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	1.0	0.8986
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	1.4	0.8978
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	2.8	0.8524
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	3.0	0.8616
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	3.9	0.8303
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	5.7	0.8271
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	6.0	0.8341
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	8.1	0.8340
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	8.4	0.8316
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	8.8	0.8516

Compare expression of checked genes

Lus10036376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.