Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09740 334 / 1e-111 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G61450 290 / 1e-94 ATSYP73, SYP73 syntaxin of plants 73 (.1.2) AT3G45280 284 / 4e-92 ATSYP72, SYP72 syntaxin of plants 72 (.1) AT5G41390 148 / 2e-40 PLAC8 family protein (.1.2) AT1G63830 145 / 8e-40 PLAC8 family protein (.1.2.3) AT4G23470 135 / 3e-36 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014759 [exp] 713 / 0 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10023178 [exp] 330 / 6e-110 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10019925 [exp] 323 / 7e-107 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10015075 [exp] 320 / 5e-106 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10026495 [exp] 318 / 6e-105 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10036118 [exp] 307 / 1e-100 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10018826 [exp] 176 / 4e-50 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10000149 [exp] 139 / 6e-39 AT5G41390 103 / 3e-28 PLAC8 family protein (.1.2) Lus10017509 [exp] 143 / 7e-39 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087400 [exp] 336 / 2e-112 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1) Potri.006G129500 [exp] 316 / 1e-104 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 309 / 5e-102 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.014G087600 [exp] 172 / 2e-49 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2) Potri.003G130700 [exp] 165 / 5e-47 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 162 / 1e-45 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3) Potri.002G161801 [exp] 40 / 0.0004 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10036377 pacid=23174679 polypeptide=Lus10036377 locus=Lus10036377.g ID=Lus10036377.BGIv1.0 annot-version=v1.0 ATGAGCGTGATCGATTTGATAACCAGAGTCGACTCCATTTGCCGCAAGTTCGATAAGTACGATGTGGATAAGCAGACCGAGCCCAACGTCACCGGCGAAG ATGCCTTCGCCCGCCTCTACTCCACGACCGAGGCCGAACTAGACTCCACTATCCAGAAAGCGGATTCCGTTGCTTCGGCGAAGAATAGGGCTGCCGTTGT TGCTATTAATGCTGAGATTCGGAGGACTAAGGCTCGGTTGCTTGACGACATTCCAAAATTGCAGAGACTTGCTATGAAAAAGGTTAGAGGGCTTTCAATT GAAGAGATGGAGGCTCGCAGTGATTTAGTTTCTGCACTCAAAGACAGGATTGCATCCGTACCAGATGGATCCTCCACTGCAGCTCAACAAAGTAGCAATG GTGGAGGAGCTTCAGCATCTTCTACAGGAATTAAGTTTAATTCTAACTATGATGGTAGTTTTGATGATGCTTACTTCCAAAAGACTGAAGAGAGTGACCG ATTCAGGCAGGAATTTGAAATGCGCAAAATGAAACAGGCAAGTGTATCTTGTGCTTTTTCTTGGTCAACTCTTACCGAATATTTGGATCTACATACTACA TTGGTGGACGAAGGTTTAGATTTTATAGCTGAAGGGTTGGACACTCTAAAGGACATGGCGCACGATATGAATGAGGAACTCGATAGACAAGTACCTTTGA TAGATGAAATCGACGACAAGGTTGATAAAGCAGCGTCTGACCTCAGAAGTACAAATGTCAGACTTAAAGATACTGTTAACCAGCTAAGGTCCAGTCGCAA CTTTTGCATCGACATCGTACTCTTGTGTATCGTTCTGGGCATTGCTGCCTATTTGTACAAATTTCCTCGTGATCGAGCGAGCATCTCTCGTTTGTACCTC CGTAGCGCGTCGCCGTCGGCGGGGATTACGAAGAAGATGACTTATTCCGATGAGAAGGCGGCGCAAATGCAGTTGCGCCAGAATTACAGGAATCTCTGGC ACACCGATCTCTGTGGTGCCGTCGGAGCCGATGCTCCCTGTACACTTGCTGCGCTGGATACATGCCTTGTAGTGGCAACTGTGGAGAAAGAAATTGCCCT GAGTTCTGTCTTTGCTCCGAGGTGTTGTGCTGCTTTTCAAATTCAGTTGCGTCAACCCGATTCCTGCTGCAAGATGAATTCAACATCCAGACATCGACCT GGGTTCATGTTCTGCCTACAGCAGTTGGCCTGCATATGTTCCTGCGTTGCCTGCTTAACTGGGATCGATGAAATAGCTGACCTTGCTGACCTCTTGACTT GCCTCTCTGATCTTGTCTTCTGCTCCGTTTGTCCATGCCTTCAGACTCAACACAAAGTTGAGATGGATCAAAGGGACATCAAGTATGGACCTCCACCAAC GATGGGGGTTCCTCCAATGCAACAGATGTCACGAATTGACCAGCCTATCCCTCCTTCTGCAAACAACTATCACTCACCATATCAAGAGGATCTCAAGGCC AAGAGTGGTCCAATGAGTCAACCTCCTCCACTGTATCCGGGCGCAGGTTATCCGTATGGAGGATATCCTCCTCAGGGACCAGGATATGGTCCTCCTCCGC CTGGATATCCTTATTCTGGATCCTACCAAGGATATCCTCCCCCGGGATACATTAATCAGTCCCCGGGATACCCTCCTTCGTATCCGCCACCGCCTTCTGC TTATCCTCCGCCTAATTACTCTAACAACAACCACCACGACCACAAAAAGTGA
AA sequence Show only first row Show all	>Lus10036377 pacid=23174679 polypeptide=Lus10036377 locus=Lus10036377.g ID=Lus10036377.BGIv1.0 annot-version=v1.0 MSVIDLITRVDSICRKFDKYDVDKQTEPNVTGEDAFARLYSTTEAELDSTIQKADSVASAKNRAAVVAINAEIRRTKARLLDDIPKLQRLAMKKVRGLSI EEMEARSDLVSALKDRIASVPDGSSTAAQQSSNGGGASASSTGIKFNSNYDGSFDDAYFQKTEESDRFRQEFEMRKMKQASVSCAFSWSTLTEYLDLHTT LVDEGLDFIAEGLDTLKDMAHDMNEELDRQVPLIDEIDDKVDKAASDLRSTNVRLKDTVNQLRSSRNFCIDIVLLCIVLGIAAYLYKFPRDRASISRLYL RSASPSAGITKKMTYSDEKAAQMQLRQNYRNLWHTDLCGAVGADAPCTLAALDTCLVVATVEKEIALSSVFAPRCCAAFQIQLRQPDSCCKMNSTSRHRP GFMFCLQQLACICSCVACLTGIDEIADLADLLTCLSDLVFCSVCPCLQTQHKVEMDQRDIKYGPPPTMGVPPMQQMSRIDQPIPPSANNYHSPYQEDLKA KSGPMSQPPPLYPGAGYPYGGYPPQGPGYGPPPPGYPYSGSYQGYPPPGYINQSPGYPPSYPPPPSAYPPPNYSNNNHHDHKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10036377 [exp]	0	1
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	6.8	0.8257
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	7.8	0.8312
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002373 [exp]	9.0	0.7986
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10043287 [exp]	13.1	0.8130
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	13.4	0.8039
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	13.4	0.8139
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	18.6	0.7786
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	21.2	0.7917
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	22.6	0.8071
AT1G74160			unknown protein		Lus10034678 [exp]	24.7	0.7772

Compare expression of checked genes

Lus10036377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.