Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61460 201 / 3e-66 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 148 / 1e-45 RING/U-box superfamily protein (.1) AT5G41400 127 / 5e-37 RING/U-box superfamily protein (.1) AT4G00305 92 / 8e-24 RING/U-box superfamily protein (.1) AT4G11360 92 / 9e-24 RHA1B RING-H2 finger A1B (.1) AT4G11370 91 / 6e-23 RHA1A RING-H2 finger A1A (.1) AT3G43430 79 / 1e-18 RING/U-box superfamily protein (.1) AT5G20885 74 / 2e-16 RING/U-box superfamily protein (.1) AT2G04240 69 / 1e-14 XERICO RING/U-box superfamily protein (.1.2) AT4G10150 69 / 4e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032290 [exp] 181 / 3e-58 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 177 / 8e-57 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10017510 [exp] 151 / 2e-46 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 138 / 2e-41 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10014758 [exp] 110 / 1e-31 AT3G61460 71 / 7e-17 brassinosteroid-responsive RING-H2 (.1) Lus10008283 [exp] 79 / 3e-18 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10019507 [exp] 64 / 9e-13 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1) Lus10043353 [exp] 64 / 2e-12 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10023617 [exp] 65 / 3e-12 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161900 [exp] 213 / 5e-71 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.014G087700 [exp] 209 / 1e-69 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.003G130900 [exp] 180 / 5e-58 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.001G101000 [exp] 158 / 2e-49 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.006G217000 [exp] 73 / 3e-16 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 71 / 1e-15 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.007G086300 [exp] 71 / 1e-15 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.010G133200 [exp] 69 / 7e-15 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133300 [exp] 69 / 8e-15 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.011G150800 [exp] 69 / 9e-15 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036378 pacid=23174532 polypeptide=Lus10036378 locus=Lus10036378.g ID=Lus10036378.BGIv1.0 annot-version=v1.0 ATGGGGTTTCCGATCGCATACACCGAGGTTTTCATGCCGAAGATCTTCGTCCATGCGCTTTCCTTCCTCGGATTCCTCCGTACCGCAATCATTTCTCTCT TCACCGTCCTCGGCCTCTCCGACTTCATCGAAGCTGCCGCCGACAACATCTGGCAGCAGGCCCCCCACGCGCGCGCTATGCCCCCCCGCGCCCCGCCCTC CGGCCCGCCGGCCCCGGCGGCGAGGACGTCGTCGATTCACCAACACGCAATCAATCATCCTCCGCCGCCTCCTCCCTCGGCCGAGCTAATCCGGGAGATC CTGCCGGTAATCAAGTTTGAGGAGCTGGCAGAGGAAGCCGCAGTGCCGGAGAGCTGCGCGGTGTGCCTGTACGATTTCGAAGGAGAGGACGAGATCAGGT GGCTGAAGAGCTGCCGACACGTGTTCCACCGGGCGTGCCTGGACCGTTGGATGGATCACGACAGGAGCACGTGTCCGCTCTGCAGGACGTCGTTCGTGCC TGAGGAGATGCGGGAGGAGTTCGATCGGCGATTGTGGGCTGCGGCTGCCGCCGGCGACGTGGACGATTTCTACAGTGAGTACAGTACCGTTGCTGTTTTT TAG
AA sequence Show only first row Show all	>Lus10036378 pacid=23174532 polypeptide=Lus10036378 locus=Lus10036378.g ID=Lus10036378.BGIv1.0 annot-version=v1.0 MGFPIAYTEVFMPKIFVHALSFLGFLRTAIISLFTVLGLSDFIEAAADNIWQQAPHARAMPPRAPPSGPPAPAARTSSIHQHAINHPPPPPPSAELIREI LPVIKFEELAEEAAVPESCAVCLYDFEGEDEIRWLKSCRHVFHRACLDRWMDHDRSTCPLCRTSFVPEEMREEFDRRLWAAAAAGDVDDFYSEYSTVAVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	0	1
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	1.0	0.9623
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	1.4	0.9339
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	3.0	0.9142
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	5.5	0.8984
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	6.5	0.9059
AT4G29120			6-phosphogluconate dehydrogena...		Lus10012950 [exp]	6.8	0.8776
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	8.8	0.8953
AT4G32020			unknown protein		Lus10005344 [exp]	8.9	0.9073
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	10.2	0.9030
AT5G67020			unknown protein		Lus10019344 [exp]	11.0	0.9077

Compare expression of checked genes

Lus10036378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.