Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01580 592 / 0 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G01590 586 / 0 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 560 / 0 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G23020 538 / 0 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 468 / 2e-156 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 268 / 4e-79 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT5G49740 243 / 1e-69 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT5G49730 242 / 2e-69 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT1G19230 90 / 2e-18 Riboflavin synthase-like superfamily protein (.1.2) AT4G25090 85 / 7e-17 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039268 [exp] 557 / 0 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 524 / 8e-177 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 455 / 3e-151 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10027507 [exp] 345 / 4e-104 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10007586 [exp] 246 / 4e-71 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10019488 [exp] 224 / 6e-63 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10012161 [exp] 211 / 1e-59 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10043339 [exp] 99 / 2e-21 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10020644 [exp] 87 / 2e-17 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088000 [exp] 689 / 0 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 575 / 0 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 562 / 0 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 562 / 0 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079100 [exp] 556 / 0 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.015G083200 [exp] 243 / 4e-70 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 240 / 6e-69 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.001G079000 [exp] 231 / 1e-65 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.012G111600 [exp] 91 / 1e-18 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.005G026200 [exp] 89 / 7e-18 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10036379 pacid=23174495 polypeptide=Lus10036379 locus=Lus10036379.g ID=Lus10036379.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCTGCGGCAACGGTGTACCGGACGATGGCGTTTGTGGTGACGTTGGGATATTTGATTATGTGGATTATGATCCCAACCAACAAATTCAATA CCACGTGGCTCCCTGCCCTCCAAAGTTTGCTCAATTCTTCCAATTACTTTGGTACACAAGGAGCTACGCTTGTAATTTACCCGTTGCCGATGCTCTTGAT TGCCGTACTGGGTTGCCTTTACCTTCATTCCCTAGCAACATCAACCACTCAAAGAAGTAGCAGCTTGGAAAGGGATGGCTGGACAAAACGGCGTCGTGAA TGGAGGAGGCCAACGTGGTTAAGGGGTCCACTTGGGATAGTTTCTGGGACAGAGCTTGTCTTTTTGACCATGTTCTTGGCCTTGTTAGTTTGGTCTTTTG TCATCTACTTACGCCACGGCCACGCCGCCTTCACTTCCCCGGCGGCGGCAATCCCCGGTGAGACAATATGGCAAGCAAAGTTTAGAACTTGGGGTTTGGT GTTTGGATTTGTGGGGAACATATGCCTGGCAGTGCTGTTCTTACCGGTGGCGCGTGGGTCGCCGGTGCTGCCGTTGTTTGGATTGACGTCGGAAGGAAGC ATAAAATATCACATTTGGTTAGGACACTTGACATTGTTTCTCTTCACCCTACATGCCCTCTCCTATATTATCCTCTGGACTATTCAAAATCGGATGTTCA AGATGTTTCTATGGAGAAAAGCCGATGAATCAGCAATAGCAGCAGAGATATCGATGGCGGCAGGGCTAATAATGTGGGTAAGTAGCTTCCCAAAGATAAG GAGGAAGTCATTTGAGCTCTTCTTCTACACACATTACCTCTACATTGTGTTCATAGTTTTCTTCATATTCCACGTCGGCATCTCATACGCCTACACCATG CTCCCGGGCTTCTACATCTTCCTCGTCGATCGTTACCTTCGACTCTTGCAATCTCGTGACCAAGTCCGTCTCCTCTCCGTCCGGATCCTGCCTTGTCAAG CTCTTGAGCTCAATTTCTCCAAGTCCCCAGGATTGCGTTACAGTCCGACGAGCATAATGTTCTTGAACGCAAGCTTCATCTCAAAGCTCCAATGGCATCC TTTTACAGTAATTTCCAACAGTAACTTGGAACCCACGACTCTAAGTGTCCTAGTCAAAAGCACTGGAAGTTGGACCACAATTCTCTACATGATGATTTCA TCCCCATATTTTCAGCATCACAATTTCAACGTCTCCGTAGAAGGACCCTATGGACCTATTTCCACTGATTTCCTGAAGCACGACACTATTGTGTTGGTGA GTGGAGGCACCGGAATCACACCTTTCATATCCATCATAAGAGAGCTCATCCATGGCGCACTAACCAATAAGTGGACCACACCACCTAAAGTAGTCCTAGT ATGCACATTCAAGACTGCTTCGGACCTGACCATGCTCGATCTTATCGTTCCGGTCTCTGACTCGCCGTCTCTTCTGTCCTGTCTGGACATCAGGATCGAA GCATATGTGACAAGGGATACTGAGCCACGTCCCAGTACGGACTCGGACTTGAAGATCCACGCGAGATGGTTCAATCCCCGTCCATCGGACATGCCAATCT CGCCGATCCTAGGCAGCGATAAGGGGTGGTTGTGGCTGGCTGGGATCATCTCATCGTCTTTTACAGTGTTTGTGATCGTGGTGGGGTTGGTCGGTCGCTA CTACATTTTCCCGATCGATCACAACACGGATATGGTGTTTCCGTGGTCAGGGAGGTCTCTGGCGACAATGTTGATATTATGCATGTGTATAGCCACGGCT GCAAGTGCAGCCGTGGCGTGGAACAAGAGACAGAATGCGAGGGAGACAGAGAAGTGTAGCGATGAGAATGGTGGGGGGTCGTCGTCGAGATGGATACTTG GATCGCCCGCGTGGTGGGAGGTTAGTGTGGAAAGAGAGGTGGAGAGTGTTGTTCCGAAGAGTGAATATGTGAAGGAGACTACAACTAGTGTGCAGTATGG GAAAAGACCTGACCTGAAGAGAATATTGTTTGATTGCAAAGGAGAAAGCATAGGAGTGCTGGCTTCTGGGCCCAAGCAAATGAGACAACAAGTGGCCCAG ATATGTGCTTGTGGGCTTGTCAACAATCTGCATTTCGAGTCCATCAGCTTTAGCTGGTGA
AA sequence Show only first row Show all	>Lus10036379 pacid=23174495 polypeptide=Lus10036379 locus=Lus10036379.g ID=Lus10036379.BGIv1.0 annot-version=v1.0 MAAAAATVYRTMAFVVTLGYLIMWIMIPTNKFNTTWLPALQSLLNSSNYFGTQGATLVIYPLPMLLIAVLGCLYLHSLATSTTQRSSSLERDGWTKRRRE WRRPTWLRGPLGIVSGTELVFLTMFLALLVWSFVIYLRHGHAAFTSPAAAIPGETIWQAKFRTWGLVFGFVGNICLAVLFLPVARGSPVLPLFGLTSEGS IKYHIWLGHLTLFLFTLHALSYIILWTIQNRMFKMFLWRKADESAIAAEISMAAGLIMWVSSFPKIRRKSFELFFYTHYLYIVFIVFFIFHVGISYAYTM LPGFYIFLVDRYLRLLQSRDQVRLLSVRILPCQALELNFSKSPGLRYSPTSIMFLNASFISKLQWHPFTVISNSNLEPTTLSVLVKSTGSWTTILYMMIS SPYFQHHNFNVSVEGPYGPISTDFLKHDTIVLVSGGTGITPFISIIRELIHGALTNKWTTPPKVVLVCTFKTASDLTMLDLIVPVSDSPSLLSCLDIRIE AYVTRDTEPRPSTDSDLKIHARWFNPRPSDMPISPILGSDKGWLWLAGIISSSFTVFVIVVGLVGRYYIFPIDHNTDMVFPWSGRSLATMLILCMCIATA ASAAVAWNKRQNARETEKCSDENGGGSSSRWILGSPAWWEVSVEREVESVVPKSEYVKETTTSVQYGKRPDLKRILFDCKGESIGVLASGPKQMRQQVAQ ICACGLVNNLHFESISFSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036379 [exp]	0	1

Compare expression of checked genes

Lus10036379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.