Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) AT5G01880 92 / 6e-24 RING/U-box superfamily protein (.1) AT3G10910 89 / 8e-23 RING/U-box superfamily protein (.1) AT1G20823 85 / 4e-21 RING/U-box superfamily protein (.1) AT1G76410 81 / 2e-19 ATL8 RING/U-box superfamily protein (.1) AT1G49210 81 / 4e-19 RING/U-box superfamily protein (.1) AT1G49200 81 / 4e-19 RING/U-box superfamily protein (.1) AT1G49220 81 / 7e-19 RING/U-box superfamily protein (.1) AT1G49230 80 / 8e-19 RING/U-box superfamily protein (.1) AT4G17905 81 / 1e-18 ATL4H RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025146 [exp] 108 / 2e-30 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10025145 [exp] 100 / 1e-27 AT5G01880 96 / 6e-26 RING/U-box superfamily protein (.1) Lus10022743 [exp] 99 / 1e-26 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10025228 [exp] 96 / 8e-26 AT5G01880 97 / 5e-26 RING/U-box superfamily protein (.1) Lus10029037 [exp] 94 / 2e-24 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10025144 [exp] 91 / 1e-23 AT5G01880 87 / 5e-22 RING/U-box superfamily protein (.1) Lus10006787 [exp] 85 / 9e-21 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10006785 [exp] 84 / 3e-20 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10005817 [exp] 84 / 5e-20 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136200 [exp] 106 / 3e-29 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 97 / 6e-26 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 96 / 4e-25 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 96 / 5e-25 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 90 / 4e-23 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 89 / 1e-22 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 87 / 2e-21 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 86 / 3e-21 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 82 / 6e-20 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 82 / 2e-19 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036380 pacid=23174680 polypeptide=Lus10036380 locus=Lus10036380.g ID=Lus10036380.BGIv1.0 annot-version=v1.0 ATGCACCGCCTCATGCTGCTCGATTCGCCGCAGGACTTGGGTTTTCAGTTGGCGCATAACACCACCGACCCAGGAATTGATATCGAGGCTGAGCGCCGAC ACATGTGTCTTTTTGTAGCAGGCGTGGTCTTCATCTTGATCTCTTTTATTGGCTATATCTGGTACGACATCCTCTACGGTCAACCCAACCTGCCGCCGCC AACGTCGGCGGCTGCTGCTGCTATCAATAGTGGTGGTCATAACCTGAGGTTGAGCCAAGTGTTCAGCTACGGGTCTGTTGCACGTGAGATGATGTCGACG ACCGAGTGCTCGATTTGTTTGGGCGAGTTCTCGGATGGGGAGAAAGTTCGGGTCCTGCCCGAATGTAACCATGGGTTCCACGTGGTTTGCATCGACGGGT GGCTGGCGTTGCACTCCTCTTGCCCCAACTGTCGGCATTCGGTGGCTGCCCCGTGCCCGAGGCTGCCGGGAAATTGA
AA sequence Show only first row Show all	>Lus10036380 pacid=23174680 polypeptide=Lus10036380 locus=Lus10036380.g ID=Lus10036380.BGIv1.0 annot-version=v1.0 MHRLMLLDSPQDLGFQLAHNTTDPGIDIEAERRHMCLFVAGVVFILISFIGYIWYDILYGQPNLPPPTSAAAAAINSGGHNLRLSQVFSYGSVAREMMST TECSICLGEFSDGEKVRVLPECNHGFHVVCIDGWLALHSSCPNCRHSVAAPCPRLPGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05280			RING/U-box superfamily protein...		Lus10036380 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	4.2	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	6.0	1.0000
AT4G14746			unknown protein		Lus10035902 [exp]	7.3	0.9450
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	7.3	1.0000
					Lus10024141 [exp]	8.5	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	9.5	1.0000
					Lus10013255 [exp]	10.4	1.0000
					Lus10013259 [exp]	11.2	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	12.0	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	12.7	1.0000

Compare expression of checked genes

Lus10036380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.