Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01580 575 / 0 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G01590 547 / 0 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 536 / 0 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G23020 517 / 3e-174 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 465 / 7e-155 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 277 / 2e-82 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT5G49730 241 / 4e-69 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT5G49740 239 / 2e-68 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT1G19230 97 / 2e-20 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 87 / 3e-17 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039268 [exp] 547 / 0 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036379 [exp] 538 / 0 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 464 / 2e-154 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10027507 [exp] 358 / 2e-108 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10007586 [exp] 249 / 6e-72 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10012161 [exp] 233 / 3e-67 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10019488 [exp] 229 / 9e-65 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10043339 [exp] 96 / 3e-20 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10017527 [exp] 90 / 3e-18 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088000 [exp] 619 / 0 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 572 / 0 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 564 / 0 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079100 [exp] 553 / 0 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 541 / 0 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.012G084800 [exp] 269 / 2e-79 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.015G083200 [exp] 250 / 2e-72 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.001G079000 [exp] 224 / 9e-63 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.003G133300 [exp] 92 / 1e-18 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 91 / 1e-18 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10036381 pacid=23174610 polypeptide=Lus10036381 locus=Lus10036381.g ID=Lus10036381.BGIv1.0 annot-version=v1.0 ATGGAAATCGCTTGTTTGAGGTCGTTGCTGAGGTTGTTCATCATTTGTCTTCTGCTTGGCTACTCAATCCTGTGGATAATGTTGCCTACCAAGACTTACA AGTACGCTTGGCAACCCAAGTTGAGCTCCCACCTCACTTCCCATTATTTTGGAAACCAAGAGATGAAAACGTTGATATTCACATTGCCTCCACTCTTGGC CGCTCTTCTTAGCTGCATCTATCTCCACCTGGGCAGCTATGTCATTTCTCCCTCTTATAATCTACACAACCAACAACCAGCTGCGAAAAGTGGCGGCGGC GGCGTAGAAAAGCGTATGCTGGCCACGTGGCGGAAGCCGATGCTAGTGAAAGGGCCGCTGGGAATAGCGACGGGGATAGAATTGACATTTCTCATCATGT TGGTGTTGCTCCTTGTTTGGTCTCTCTATAACTATTTCAACAACAGCTTCAGATACATCACCGCCGCCACTTCCGGCGCCGAGAAAGTGTGGGAGGTGAA GTTGGACTTGGGAGGACTATGGCTAGGCCTGGTAGGCAACATATGCCTCACGCTCCTCTTCTACCCGGTGGCACGTGGGTCCTCAATCTTGCCCTTCTTC GGGCTGACGTCAGAAGGGAGCATTAAGTACCACATCTGGTTGGGACACGTTGTCATGATCTTCTTCACTTCCCACGGTATTTGCTACATCGTCCACTGGG CCATCACACACCAAATGTCCCAAGCGCTGAAATGGACGAACATCACGGGAATATCCAACGTGGCGGGAGAGATCTCGCTGGCGGCGGGACTCATGTTGTG GGCCACCACATTCCCGCGTATTAGGAGGAAAATGTTCGAGCTCTTCTTCTACACGCACTACATGTACGTCGTGTTTGTCGTCTTCTTCGTCTTCCACGTC GGATTCTCGTACGCTTGCTACATGCTCCCGAGCTTCTACCTCTTCCTAGTCGACCGCTACCTCCGGTTCCTGCAGTCCCGGCCACGTGTCCGGCTCGTTT CTTCCAGGATCTTGCATGGCCAAACACTCGAACTCAACTTTTCAAAATCTCCAGGGTTGAAGTACAATCCGACGAGCGTGATGTTCCTGAACGTCCCGAG CATTTCGAAGCTGCAATGGCATCCTTTCACGATCAGTTCGAACAACAACTTGGAATCGGACAGGCTTAGTGTTGTAATCAAAGGGGAAGGAAGTTGGACC AACAAGCTTTACCAAATGGTTTCCAACCCTAACGTTGACCGTTTGGACATCTCCGTTGAAGGACCTTATGGCCCTCTTTCCACTAATTTCCTCAGGCACG AGACACTAGTTCTGGTGAGCGGAGGGAGCGGCATCACACCATTCATTTCCATACTACGTGAACTCATGCACGTAAGTTCAAACCTCCAACTCAAAACCCC ACAAGTAACCCTAATATCCTCCTTCAAGAACTCCAACGACCTCACAATGCTCAACCTCCTCCTCCCACTAACCACCAATAACTCACTACCCTCGAATCTC CGCCTCACCATCCAAGCCTACATCACCCGTGAAAAACAACCTCCATCATCAACCATCAACTTCAACGAGAACGTTCAGTCCAAATGGTTCAAGCCATCCC CAACCGATTCCCCGATCTCCCAACCCCTAGGCCCCAACATCTGGCTCTGTCTCGCGGCCATCGTGGCTTCCTCTTTCGTGGCCTTCCTCGCGGTCATCGC ACTCATCACTCGCTACTACATCTACCCAAAGGGGCAAAATTCAACGCATGGATTTCCCGTGACGTTGACCGGCTTGATCTACATGTTGGTGTTGTGCGCG TGCATAGTTGTGGCCGCTAGTGTTGTGGTTCTTTGGAACAAGAAGGATGAGACGGTGGTTCAGATTCGAAACGTGGAACCGGGGAATAGTCCGGCGGATT GGTCGTCGGTGACGGTGGTGAATGATGGCGGTAATGAAACAAGGGAGTTGGAGAGCTTGCCTATAAGTTCTATTTTGGATGTGACCACTTTGCACTATGG AGCCAGGCCTAATCTAAAGAAATTGTTGGTGGAATACTGTACTGAGGTTGAAGGGAGCATAGGAGTTTTGGCGAGTGGGCCAGCGACGCTAAGGCATCAA GTGGCGACGATATGTTCAAGTGGTTTGGCTGACGAGAATTTGCACTTTGAGTCTATCAGCTTTAGTTGTACCCAGGAAAAAGAATACGAGGTCGTGGTGT TTCGGGCCCATGCTTGGCGAGTAGAGTCAAAAGCACAAGTATCGTGA
AA sequence Show only first row Show all	>Lus10036381 pacid=23174610 polypeptide=Lus10036381 locus=Lus10036381.g ID=Lus10036381.BGIv1.0 annot-version=v1.0 MEIACLRSLLRLFIICLLLGYSILWIMLPTKTYKYAWQPKLSSHLTSHYFGNQEMKTLIFTLPPLLAALLSCIYLHLGSYVISPSYNLHNQQPAAKSGGG GVEKRMLATWRKPMLVKGPLGIATGIELTFLIMLVLLLVWSLYNYFNNSFRYITAATSGAEKVWEVKLDLGGLWLGLVGNICLTLLFYPVARGSSILPFF GLTSEGSIKYHIWLGHVVMIFFTSHGICYIVHWAITHQMSQALKWTNITGISNVAGEISLAAGLMLWATTFPRIRRKMFELFFYTHYMYVVFVVFFVFHV GFSYACYMLPSFYLFLVDRYLRFLQSRPRVRLVSSRILHGQTLELNFSKSPGLKYNPTSVMFLNVPSISKLQWHPFTISSNNNLESDRLSVVIKGEGSWT NKLYQMVSNPNVDRLDISVEGPYGPLSTNFLRHETLVLVSGGSGITPFISILRELMHVSSNLQLKTPQVTLISSFKNSNDLTMLNLLLPLTTNNSLPSNL RLTIQAYITREKQPPSSTINFNENVQSKWFKPSPTDSPISQPLGPNIWLCLAAIVASSFVAFLAVIALITRYYIYPKGQNSTHGFPVTLTGLIYMLVLCA CIVVAASVVVLWNKKDETVVQIRNVEPGNSPADWSSVTVVNDGGNETRELESLPISSILDVTTLHYGARPNLKKLLVEYCTEVEGSIGVLASGPATLRHQ VATICSSGLADENLHFESISFSCTQEKEYEVVVFRAHAWRVESKAQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	0	1
					Lus10010827 [exp]	2.2	1.0000
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	3.2	1.0000
					Lus10005843 [exp]	4.6	1.0000
					Lus10006063 [exp]	4.9	0.9421
					Lus10022511 [exp]	5.3	1.0000
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	5.9	1.0000
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013925 [exp]	6.2	0.9188
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	6.5	1.0000
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	6.9	0.9902
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	7.0	1.0000

Compare expression of checked genes

Lus10036381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.