Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11350 534 / 0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 534 / 0 Protein of unknown function (DUF604) (.1) AT5G41460 525 / 0 Protein of unknown function (DUF604) (.1) AT1G01570 484 / 4e-168 Protein of unknown function (DUF604) (.1) AT1G07850 462 / 2e-158 Protein of unknown function (DUF604) (.1) AT4G00300 409 / 1e-134 fringe-related protein (.1.2) AT2G37730 396 / 1e-132 Protein of unknown function (DUF604) (.1) AT1G33250 337 / 1e-109 Protein of unknown function (DUF604) (.1) AT4G15240 331 / 6e-108 Protein of unknown function (DUF604) (.1) AT1G05280 312 / 6e-101 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017514 [exp] 556 / 0 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10007923 [exp] 553 / 0 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10032293 [exp] 544 / 0 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 478 / 7e-165 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 349 / 2e-118 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 343 / 4e-112 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 337 / 2e-110 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 320 / 3e-104 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 318 / 4e-103 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131400 [exp] 556 / 0 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 550 / 0 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 501 / 2e-174 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 488 / 1e-169 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 361 / 2e-119 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 360 / 5e-119 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 352 / 5e-116 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 335 / 4e-109 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 333 / 7e-109 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 328 / 1e-106 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10036382 pacid=23174534 polypeptide=Lus10036382 locus=Lus10036382.g ID=Lus10036382.BGIv1.0 annot-version=v1.0 ATGAAGCAAAATACCAAAGCGGCGGACGAGGAAAATCCGTTGTGGTTGAGATCCACCGTCATAACTTGCTCCCTCTCCAAATTGACAATCTCTTCCCTCT TCCTCTTAATTTCCCTCCCTTATCTAATCTATTACCTCCAATCCCCTTACTGCAATCTCCGATCCTCATCGGATTCCCTCGCTACAACCTCCCATCATCA AATTCCCGTCGAGAATCGCACTTCCGTCACTCTCACTCCTCCTCCACCGCCGCCGAAGCTCAAAACGTCCCTCCGCCACATTGTCTTCGGAATCGCCGCC TCCGCCGGCCTGTGGGATCGCCGCAAGGAGTACATCAAGCTATGGTATCTCCCCTACCAGATGCGCGGCTTTGTCTGGATCGACAAGCCTCCACCGCCGC GGGGATTCGTCTGGATCGACAAGCCTCCGCCGCCTCCGGACGGCGGCGGCGACGATTGGATGTTGCCGCCGATCAAGATCTCCGGCGACACGTCGAGGTT CGCGTACAAGCACGCGAAGGGGGACAGATCGGCGATCCGGATATCGAGGATAGTGTCGGAGACGGTGAGGCTGGGGTTGGAGGACGTGCGGTGGCTGGTG ATGGGGGACGACGACACCGTTTTCGTGGCGGAGAATTTGGTTGGGGTTTTGTCCAAATACGACCACGAGCAGTACTATTACATAGGGAGTAACTCGGAGA GCCATTTACAGAACATAATGTTCTCGTACGCGATGGCGTACGGCGGCGGGGGTTTTGCGATCAGCGGGGGTTGTGCGATCAGCTACCCGTTGGCGGTGGC GCTGTCGAGGATGCAGGATGGGTGTTTGGGTAGGTACCCGGGATTGTACGGCTCGGATGATCGGATACAGGCTTGTATGGCTGAGATTGGAGTTCCTCTT ACCAAAGAGCCTGGCTTCCACCAGTTGGACGTGTACGGCAACGCATTCGGGTTATTAGCAGCACACCCAGTAACGCCGTTGGTTTCCCTCCACCACATAG ACGTGATCGAGCCAATCTTCCCAAAAGCCACTCGTCTTCAATCCCTCCAGCGGCTAGCTCTCCCGATGTCGCTCGACCCACCGGCCCTTATGCAGCAGTC CATCTGCTACGACCACAAACGGCGCTGGACGGTCTCCGTCTCCTGGGGCTACGCCGTCCAAATCATCCGTGGCACCGTCTCTCCCCGTGAGATGGAAATG CCGGTCCGAACCTTCGTTAATTGGCATAAGAAGGCAGATTACAGGGGATACGCTTTCAATACCCGACCCGTACCCAGAGACCACTGCCGGGTGCCGTTTG TTTATACTCTATCGGACGCCGTTTACGAGCCCAAGACCGGGAAGACGGCGAGCGAGTATGTCCGGCACCGGATGGACTCCCCCACCACCAAGTGTAACTG GCGGAGGTTTTCGGATCCCGAGAAGATTGATAGGGTCGAGGTTTACAAGACGCCCGACCCGGATTTGTGGGCCAAGGCTCCTCGGAAAAACTGTTGCAGA GTTTTGCCGGATTCGAAGGAGAAGAAGAAAACGGTGATGATTGATGTCGGAGAGTGTAGAGAAAATGAAATTATGGAAATGCGATAA
AA sequence Show only first row Show all	>Lus10036382 pacid=23174534 polypeptide=Lus10036382 locus=Lus10036382.g ID=Lus10036382.BGIv1.0 annot-version=v1.0 MKQNTKAADEENPLWLRSTVITCSLSKLTISSLFLLISLPYLIYYLQSPYCNLRSSSDSLATTSHHQIPVENRTSVTLTPPPPPPKLKTSLRHIVFGIAA SAGLWDRRKEYIKLWYLPYQMRGFVWIDKPPPPRGFVWIDKPPPPPDGGGDDWMLPPIKISGDTSRFAYKHAKGDRSAIRISRIVSETVRLGLEDVRWLV MGDDDTVFVAENLVGVLSKYDHEQYYYIGSNSESHLQNIMFSYAMAYGGGGFAISGGCAISYPLAVALSRMQDGCLGRYPGLYGSDDRIQACMAEIGVPL TKEPGFHQLDVYGNAFGLLAAHPVTPLVSLHHIDVIEPIFPKATRLQSLQRLALPMSLDPPALMQQSICYDHKRRWTVSVSWGYAVQIIRGTVSPREMEM PVRTFVNWHKKADYRGYAFNTRPVPRDHCRVPFVYTLSDAVYEPKTGKTASEYVRHRMDSPTTKCNWRRFSDPEKIDRVEVYKTPDPDLWAKAPRKNCCR VLPDSKEKKKTVMIDVGECRENEIMEMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	0	1
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	1.4	0.8978
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	1.7	0.8832
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	2.8	0.8811
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	3.7	0.8832
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	3.9	0.8784
AT4G21500			unknown protein		Lus10011256 [exp]	4.6	0.8754
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	5.5	0.8760
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	7.7	0.8472
AT4G38100			unknown protein		Lus10002647 [exp]	8.0	0.8750
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	9.5	0.8716

Compare expression of checked genes

Lus10036382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.