Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61490 221 / 3e-69 Pectin lyase-like superfamily protein (.1.2.3) AT3G48950 209 / 1e-64 Pectin lyase-like superfamily protein (.1) AT4G23500 207 / 1e-63 Pectin lyase-like superfamily protein (.1) AT2G23900 189 / 3e-57 Pectin lyase-like superfamily protein (.1) AT3G62110 119 / 1e-30 Pectin lyase-like superfamily protein (.1) AT4G23820 101 / 1e-24 Pectin lyase-like superfamily protein (.1) AT3G06770 93 / 2e-21 Pectin lyase-like superfamily protein (.1.2.3) AT5G49215 92 / 6e-21 Pectin lyase-like superfamily protein (.1.2) AT3G16850 87 / 1e-19 Pectin lyase-like superfamily protein (.1) AT3G42950 85 / 1e-18 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007922 [exp] 313 / 4e-105 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 243 / 1e-77 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 243 / 2e-77 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10027516 [exp] 184 / 4e-55 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 184 / 5e-55 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009972 [exp] 115 / 2e-30 AT3G62110 446 / 2e-156 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 113 / 1e-28 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 100 / 4e-24 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037714 [exp] 100 / 9e-24 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162400 [exp] 253 / 5e-82 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.003G131700 [exp] 231 / 2e-73 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 231 / 4e-73 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 196 / 8e-60 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G073900 [exp] 188 / 8e-57 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 117 / 2e-30 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 112 / 2e-28 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 104 / 1e-25 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 103 / 3e-25 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 99 / 8e-24 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10036383 pacid=23174514 polypeptide=Lus10036383 locus=Lus10036383.g ID=Lus10036383.BGIv1.0 annot-version=v1.0 ATGGCGGCGGGGTTAGCCGGATCAGCGGAGAGCAGGAATGCAAAAAGGGTAGTTGACTCCTTCGAGTACACTGCAATGAGCTGCAGAGCTCACACAGCTT CCATTACAGAGTATGGAACAGTTGGGGATGGAAATACATCAAACACCAAGGCATTTAAAGACGCCATTGATTATTTGGGTCAGTTTTCCCAAGGTGGTGG GTCCCAGCTCTATGTCCCCGCCGGGAAATGGCTCACCGGAAGCTTTAGCCTCGTCAGCCACTTCACTCTGTTTATGCATAAGGATGCTGTTCTTCTCGCC TCCCAGTCTGGCGTCAGAATCAAGGCCGGCGTCGGCCGAGGAGGGTTCGTGAAGGACATCTACGTCAGGAGGATGACGATGCACACGATGAAGTGGGCCT TCTGGATGACCGGGAATTACGGATCTCACGCAGACGGGAATTACGACCCCAACGCCCTCCCCGAAATCACGAACATCAACTACAGGGACATGACGGCGGA GAACGTGTCGATGGCGGCGAGGCTGGAGGGGATCGCCGGAGATCCGTTCACGCAGATCTGCATATCGAATGTGACGATTGCGATGGCGGCGAAGGCGAAG AAGGTGCCGTGGACTTGTACGGATGTGGGAGGGATCACGAGCGGGGTGAGTCCCCGGCCTTGCGATCTGCTGCCGGATCAAGGGGAGGGGAAAATGGCGA CGGATAGCTTGGCGATCGATATGGTTGAGCTGAAAACTTGCTCTTCCAAGATTGGTTACATCATCAAGTGA
AA sequence Show only first row Show all	>Lus10036383 pacid=23174514 polypeptide=Lus10036383 locus=Lus10036383.g ID=Lus10036383.BGIv1.0 annot-version=v1.0 MAAGLAGSAESRNAKRVVDSFEYTAMSCRAHTASITEYGTVGDGNTSNTKAFKDAIDYLGQFSQGGGSQLYVPAGKWLTGSFSLVSHFTLFMHKDAVLLA SQSGVRIKAGVGRGGFVKDIYVRRMTMHTMKWAFWMTGNYGSHADGNYDPNALPEITNINYRDMTAENVSMAARLEGIAGDPFTQICISNVTIAMAAKAK KVPWTCTDVGGITSGVSPRPCDLLPDQGEGKMATDSLAIDMVELKTCSSKIGYIIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61490			Pectin lyase-like superfamily ...		Lus10036383 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	2.8	0.9178
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	3.5	0.8859
					Lus10015218 [exp]	3.7	0.9180
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10013484 [exp]	9.8	0.7169
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	10.2	0.8368
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	10.2	0.8384
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	11.2	0.8368
					Lus10000380 [exp]	12.1	0.8368
					Lus10010383 [exp]	13.0	0.8368
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	13.7	0.8357

Compare expression of checked genes

Lus10036383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.