Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01370 681 / 0 ATMPK4 MAP kinase 4 (.1) AT1G01560 650 / 0 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 617 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT4G11330 613 / 0 ATMPK5 MAP kinase 5 (.1) AT1G07880 568 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT2G43790 537 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 522 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 504 / 2e-179 ATMPK10 MAP kinase 10 (.1) AT1G10210 419 / 2e-146 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 416 / 5e-145 ATMPK7 MAP kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007921 [exp] 770 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 660 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 642 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 635 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10032295 [exp] 567 / 0 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 562 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 561 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 526 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 524 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162500 [exp] 703 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 701 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.003G131800 [exp] 666 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 652 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 566 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 554 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 530 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 526 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.005G231100 [exp] 428 / 1e-149 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 418 / 7e-146 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036384 pacid=23174627 polypeptide=Lus10036384 locus=Lus10036384.g ID=Lus10036384.BGIv1.0 annot-version=v1.0 ATGTCGATGGAGACGAGCTCAGGAGGCGAGCACAACAACAGCAGCAGCACAAGCAGCAACATCAGAGGAACTCAGACTCACTCTGGACGCTACGTTCAGT ATAATGTGTACGGCAATCTCTTCGAGGTCTCCAGGAAGTACGTCCCTCCGATTCGCCCCGTCGGTCGAGGCGCTTGCGGTATCGTCTGTGCTGCAATGAA TTCCGAGACACGAGAAGAAGTGGCAATAAAGAAGATTGGCAATGCATTTGACAACCGCATAGATGCCAAAAGGACTCTGCGAGAAATTAAGCTTCTGCGG CATATGGATCATGAAAATGTTATTGCCATTAAAGACATAATTAGGCCACCTCAAAAGGAGAACTTCAATGATGTTTACATTGTTTACGAGTTGATGGACA CAGATCTTCATCAAATAATACGCTCCAACCAACAATTGACAGATGACCATTGTCGTTATTTTCTGTATCAAGTGCTGAGAGGACTCAAATATGTTCATTC AGCACATGTTCTGCATCGTGACCTAAAGCCCAGCAACTTGCTTTTGAATTCTAATTGCGACCTGAAGATTGCAGACTTTGGGCTTGCAAGGACAACTTCT GAAACAGATTTCATGACCGAGTATGTTGTTACTCGTTGGTATCGAGCACCGGAGTTACTCCTTAACTGTTCGGAGTACACTGCTGCAATTGATATATGGT CAGTGGGTTGCATACTTGGTGAAATCATGACACGTCAACCTTTGTTTCCTGGCAAAGACTATGTTCATCAGCTGAGACTCATCACAGAGCTCATAGGTTC CCCTGATGACACTAGCCTTGGGTTCCTAAGAAGTGATAATGCTCGAAGATACGTGGGGCAGCTTCCACAGTACCCAAAGCAAAATTTTGCAGCTAGATTT CCGGAGTCATCTGCTGGTGCTGTTGAGTTATTAGAGAAGATGCTAGTATTTGATCCCAACAGACGCATAACTGTGGACGAGGCATTATGCCACCCGTACC TGGCACCTCTGCACGACATCAACGAGGAGCCAGTTTGCCCGAGGCCTTTTGTTTTCGACTTCGAGCAGCCATCATTTACCGAGGAAAACATAAAGGAGCT CATCTGGAGAGAATCTGTAAGATTCAATCCAGACGCTTGA
AA sequence Show only first row Show all	>Lus10036384 pacid=23174627 polypeptide=Lus10036384 locus=Lus10036384.g ID=Lus10036384.BGIv1.0 annot-version=v1.0 MSMETSSGGEHNNSSSTSSNIRGTQTHSGRYVQYNVYGNLFEVSRKYVPPIRPVGRGACGIVCAAMNSETREEVAIKKIGNAFDNRIDAKRTLREIKLLR HMDHENVIAIKDIIRPPQKENFNDVYIVYELMDTDLHQIIRSNQQLTDDHCRYFLYQVLRGLKYVHSAHVLHRDLKPSNLLLNSNCDLKIADFGLARTTS ETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGKDYVHQLRLITELIGSPDDTSLGFLRSDNARRYVGQLPQYPKQNFAARF PESSAGAVELLEKMLVFDPNRRITVDEALCHPYLAPLHDINEEPVCPRPFVFDFEQPSFTEENIKELIWRESVRFNPDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	1.0	0.8970
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034665 [exp]	2.4	0.8610
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	6.5	0.8155
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	7.1	0.8427
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	7.7	0.8066
AT3G24530			AAA-type ATPase family protein...		Lus10034913 [exp]	9.8	0.8119
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	10.2	0.8148
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	12.0	0.8187
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	13.3	0.8382
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	13.3	0.8029

Compare expression of checked genes

Lus10036384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.