Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46080 401 / 3e-140 unknown protein AT1G01550 368 / 5e-127 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) AT4G01360 218 / 4e-68 unknown protein AT3G61500 117 / 3e-30 unknown protein AT1G74450 48 / 6e-06 Protein of unknown function (DUF793) (.1) AT1G77855 42 / 0.0003 unknown protein AT1G22030 41 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007920 [exp] 627 / 0 AT2G46080 433 / 8e-153 unknown protein Lus10005122 [exp] 489 / 1e-174 AT2G46080 432 / 1e-152 unknown protein Lus10018821 [exp] 482 / 7e-172 AT2G46080 431 / 5e-152 unknown protein Lus10039581 [exp] 54 / 1e-07 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10005326 [exp] 52 / 4e-07 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10042809 [exp] 42 / 0.0005 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088600 [exp] 443 / 1e-156 AT2G46080 431 / 1e-151 unknown protein Potri.002G162600 [exp] 442 / 3e-156 AT2G46080 456 / 7e-162 unknown protein Potri.010G171000 [exp] 117 / 1e-29 AT1G01550 69 / 7e-13 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Potri.008G085600 [exp] 93 / 5e-21 AT2G46080 52 / 3e-07 unknown protein Potri.003G018700 [exp] 50 / 9e-07 AT1G22030 266 / 2e-87 unknown protein Potri.019G084400 [exp] 50 / 1e-06 AT1G77855 47 / 5e-06 unknown protein Potri.001G211900 [exp] 45 / 4e-05 AT1G22030 291 / 2e-97 unknown protein Potri.002G067800 [exp] 45 / 5e-05 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1) Potri.002G090300 [exp] 43 / 0.0002 AT1G22030 360 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10036385 pacid=23174638 polypeptide=Lus10036385 locus=Lus10036385.g ID=Lus10036385.BGIv1.0 annot-version=v1.0 ATGAGCCAACCACAGGAACCAAACCGACCGTTTTTCCCATTTGGAAATCCTTTCCGGATGATATTACCCAAAGCCTCTCAGATGTCTCCAAGCCTTCTCT CCGTATTAAGTACCTTCGAGGAAACATTGGCCGAGCGGTTGAGTAAACTCCTTCCCAAAGGCAAAGGCGACGTCTTGAGTCTTCCGTGGATGAAGTTAGC CATGGATTCTCTCTGCGAGACTCACAATGACATAAAGACGCTCATTACAAGTCTCGAGCTTCCTGTCACCGACTGGGATCAGAAGTGGATCGATGTCTAT CTGGACATCAGTGTAAGACTACTCGACATTTGTATCGCTTTCAGCTCCGAGATCACCAGGCTCAACCAAGGCCATCTCTTACTCCAGTGTGTCCTGCATA ATTTGGAATCCGGGACACCTGAGCGGTATATAAAGGCGCGATCTTCCCTCGACAACTGGAGACACCACATTAGTTCGAGGAATCCTAGAGTTCAGAACTG CCGTCCCATCTTAGACAGTCTTGTGGAGTCGTTGGATCTTCCCAAGGTTAAGAATTCTGCCAAAGAGAAAGTCCTAATGCGTGCCATGTACGGTGTCAAG GCCGAGACAATATTTGTCTGTAGCGTATTTGCTTCAGCTTTTTCCGGTTCCTCGAACGATTTAGTCGATTTGAATGTTCCGGATACGTTCTTGTGGGCGC AGGCCTTTTCCGATTTGCAGATGAGAGTGAATGTTGAAATCAGAGAGATATTCTCTTCCGGGAAGAAATCTACAGCTCTGAACGAGCTGGAATCTGTAGA TTCTATCGTAAAGAAACTGTATCCTGCGATTCAAGATGGGGTAGAAGCCACCGAGGAGGAAGGGTTGAAGAGTTGCTTCACCGATCTGCAGGGGGGAGCG GTGAAGCTATCCGAAGGCCTGGATCTGGTAGGGAAACAAGTGGATATCTTCTTCAAGATAGTTCTTAGCGGGCGTGATGCTTTGCTTTGTAATCTAAGGT TGTCTTGTACTGATGGTAATGTTGTGACGGGAAGCCGCAGAGAGGATGAACTCGTTAGATGA
AA sequence Show only first row Show all	>Lus10036385 pacid=23174638 polypeptide=Lus10036385 locus=Lus10036385.g ID=Lus10036385.BGIv1.0 annot-version=v1.0 MSQPQEPNRPFFPFGNPFRMILPKASQMSPSLLSVLSTFEETLAERLSKLLPKGKGDVLSLPWMKLAMDSLCETHNDIKTLITSLELPVTDWDQKWIDVY LDISVRLLDICIAFSSEITRLNQGHLLLQCVLHNLESGTPERYIKARSSLDNWRHHISSRNPRVQNCRPILDSLVESLDLPKVKNSAKEKVLMRAMYGVK AETIFVCSVFASAFSGSSNDLVDLNVPDTFLWAQAFSDLQMRVNVEIREIFSSGKKSTALNELESVDSIVKKLYPAIQDGVEATEEEGLKSCFTDLQGGA VKLSEGLDLVGKQVDIFFKIVLSGRDALLCNLRLSCTDGNVVTGSRREDELVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46080			unknown protein		Lus10036385 [exp]	0	1
AT4G25670			unknown protein		Lus10039276 [exp]	1.0	0.9285
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	2.0	0.9190
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	3.0	0.8939
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	3.2	0.8933
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	3.5	0.9025
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	4.5	0.9089
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	4.6	0.8994
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	4.7	0.8919
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	5.7	0.9098
AT1G25275			unknown protein		Lus10006792 [exp]	7.1	0.8813

Compare expression of checked genes

Lus10036385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.