Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01540 680 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 667 / 0 Protein kinase superfamily protein (.1.2) AT4G02630 524 / 0 Protein kinase superfamily protein (.1) AT4G34500 475 / 9e-166 Protein kinase superfamily protein (.1) AT3G59110 459 / 2e-158 Protein kinase superfamily protein (.1) AT2G42960 451 / 2e-155 Protein kinase superfamily protein (.1) AT1G09440 444 / 3e-153 Protein kinase superfamily protein (.1) AT5G18500 441 / 1e-151 Protein kinase superfamily protein (.1.2) AT3G17420 434 / 3e-149 GPK1 glyoxysomal protein kinase 1 (.1) AT1G56720 434 / 4e-149 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007919 [exp] 812 / 0 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 539 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 531 / 0 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 520 / 0 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 499 / 1e-176 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 460 / 6e-159 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 455 / 2e-158 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 462 / 4e-158 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 471 / 1e-157 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088800 [exp] 699 / 0 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 537 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 494 / 1e-172 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 486 / 2e-169 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 464 / 1e-160 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 464 / 2e-160 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 456 / 2e-157 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G003300 [exp] 456 / 2e-157 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G139500 [exp] 452 / 1e-156 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.008G214200 [exp] 445 / 2e-153 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036386 pacid=23174538 polypeptide=Lus10036386 locus=Lus10036386.g ID=Lus10036386.BGIv1.0 annot-version=v1.0 ATGTCTCTGTACGACGCTGCATTACTGAACACTGAGCTCTCGAAGCCAACATCCATCTTCGGCCTCCATCTATGGGTGGTCATCGGCATCCTTCTCGGCT CCCTCATAGTCCTCGCCCTCTTCCTCCTCTCACTCTGCCTAACTTCTCGCCGGAAAATCCGGAAATCGGCCAAATTAGCCGACCCCACCCCGCCGGTCTC TAAAGAAATTCAGGAGATCGTCCACTTCCCATCCCGCGACCACCACCACCACCATCACGCGCCGCCGATACCCGAGATTCAGGTGGAGATCGGCAAGATC GAGCACCGCGTCGTGTTCTCCGACCGCGCTTCGAGCGGGGAGAGCAGAGCCACCGCCAGCGGCTGTGAGACGGCGTCGTTCGGCAGCGGCTGCGTCGGGC CGGAGGTTTCTCATCTAGGCTGGGGACGGTGGTACACTCTGAGGGAGCTTGAGATTGCCACTGATGGACTCTGCGAGGAGAATGTGATTGGGGAAGGCGG GTATGGGATTGTCTATCGTGGCGTCCTGGTAGATGGAACTAAAGTTGCCGTCAAGAACTTGCTCAATAACAGGGGCCAAGCTGAGAAAGAGTTCAAAGTG GAGGTAGAGGCGATCGGACGGGTCCGGCATAAGAATCTTGTGAGATTGCTAGGATACTGTGTTGAAGGTGAATACAGGATGCTTGTTTATGAATACGTTG ACAATGGTAATCTGGATCAATGGCTTCATGGTGATGTCGGAGTGGCGAGCCCTCTATCGTGGGATGTCCGTATGAATGTCATACTCGGGATGGCAAAAGC ATTGGCTTATCTCCACGAAGGTCTTGAACCGAAAGTTGTCCATCGAGACATTAAATCGAGCAATATACTCATCGATCGCAATTGGCTTCCGAAAGTTTCT GATTTCGGGCTCGCAAAGCTCCTCTGCTCCGAGCGGAGCTATGTCACTACTCGTGTCATGGGAACTTTCGGTTACGTAGCACCAGAATATGCTTGCACCG GAATGCTGAACGAGAAAAGCGATGTTTATAGCTTCGGGATACTTGTCATGGAGATAATCACTGGGAGAAGCCCCGTCGATTACAATCGTCCACAGGGAGA GGTGCATTTGGTGGAATGGCTAAAAACAATGGTTGGAAATCGGAAATCGGAAGAAGTAGTCGATCCAAAGCTGCTTGAATTGCCGTCGTCAAAGGCCCTG AAGCGGGTGCTCTTGGTGGCTCTCCGATGCGTGGATCCCGACGCGACAAAAAGGCCGAAAATGGGCCACGTGATTCACATGCTTGAAGCTGATGATGTAC TATTTCAAGATGGAAGACGTATCGCAAGAGAAGCAGCGGAATCTGCAAAACTCAGTGAAGCGGTGGTGATTTCTGATAAAAGTGAAGAAGAAGGTAGCAG CAGTAGGAACCGTGAGCAGGAAGCAAGCAGATGGAGATGA
AA sequence Show only first row Show all	>Lus10036386 pacid=23174538 polypeptide=Lus10036386 locus=Lus10036386.g ID=Lus10036386.BGIv1.0 annot-version=v1.0 MSLYDAALLNTELSKPTSIFGLHLWVVIGILLGSLIVLALFLLSLCLTSRRKIRKSAKLADPTPPVSKEIQEIVHFPSRDHHHHHHAPPIPEIQVEIGKI EHRVVFSDRASSGESRATASGCETASFGSGCVGPEVSHLGWGRWYTLRELEIATDGLCEENVIGEGGYGIVYRGVLVDGTKVAVKNLLNNRGQAEKEFKV EVEAIGRVRHKNLVRLLGYCVEGEYRMLVYEYVDNGNLDQWLHGDVGVASPLSWDVRMNVILGMAKALAYLHEGLEPKVVHRDIKSSNILIDRNWLPKVS DFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILVMEIITGRSPVDYNRPQGEVHLVEWLKTMVGNRKSEEVVDPKLLELPSSKAL KRVLLVALRCVDPDATKRPKMGHVIHMLEADDVLFQDGRRIAREAAESAKLSEAVVISDKSEEEGSSSRNREQEASRWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	0	1
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	2.0	0.8366
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	3.2	0.8046
AT1G70780			unknown protein		Lus10035084 [exp]	8.0	0.7620
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	9.2	0.8133
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	9.8	0.8333
AT5G17350			unknown protein		Lus10035268 [exp]	9.8	0.8188
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	9.9	0.8008
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	11.0	0.8085
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	13.7	0.7961
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	14.0	0.8120

Compare expression of checked genes

Lus10036386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.