Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46100 266 / 4e-90 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) AT3G04890 82 / 5e-19 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007918 [exp] 419 / 2e-150 AT2G46100 289 / 2e-99 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10015938 [exp] 83 / 5e-19 AT3G04890 223 / 8e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10009193 [exp] 64 / 5e-12 AT3G04890 199 / 5e-64 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10019445 [exp] 43 / 0.0001 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162800 [exp] 284 / 3e-97 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.013G036500 [exp] 88 / 6e-21 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10036387 pacid=23174448 polypeptide=Lus10036387 locus=Lus10036387.g ID=Lus10036387.BGIv1.0 annot-version=v1.0 ATGGCGGCATTTCTACTCCATTCCTCCGGCTCGGTAATTCACCAACGGAGCAGCAAAACTCTCGCTCCCGCTCGTCGCCGCCAAATCTCCCGAATTCAAT GCGAGAAAGCAACCAGCAGCAGTTCAGCAGCCAAACAGCGGGAAGAGGACTCTGATCAGCCTGTGAATAAAGCCATCCTGAAAGTAGCATGGTATGCCTC GGAGCTCCTAGGAGTCGCCACTTCAATTTTCCGGTCACCGTCGTCCGTAATAGAATCTTCCCGTAGCAGCAATCTCGACCTTCCGGTGGACGGTAATTCA GCAAGCCTTGATCGCTCCACGGTTGTCCAGACCATCAAGGAAGACTTCCACAGATCGTATTTCGTCACAGGGAACTTGACACCAGACGCGTATGAAGAGA ACTGCGAGTTCGCTGATCCGGCTGGCTCGTTCAAAGGGCTCCGCCGTTTCATGAGGAACTGTTCGAATTTCGGGTTGCTTATCCAGACTTCGAATATGAA GCTCACCAAATGGGATGACTTGGAGGATAAGGGAATTGGGCACTGGAAATTTAGCTGCATAATGTCATTCCCATGGCGGCCAATTCTTTCTGCAACTGGA TATACAGAGTACTACTTTGATCCACAGTCTGGACGAGTGTGCAGGCATGTAGAGCATTGGAATGTGCCCAAAATGGCACTTCTAAAGCAGCTGCTGAGGC CCAGCAAAGGCAGGAGAACCTACTAA
AA sequence Show only first row Show all	>Lus10036387 pacid=23174448 polypeptide=Lus10036387 locus=Lus10036387.g ID=Lus10036387.BGIv1.0 annot-version=v1.0 MAAFLLHSSGSVIHQRSSKTLAPARRRQISRIQCEKATSSSSAAKQREEDSDQPVNKAILKVAWYASELLGVATSIFRSPSSVIESSRSSNLDLPVDGNS ASLDRSTVVQTIKEDFHRSYFVTGNLTPDAYEENCEFADPAGSFKGLRRFMRNCSNFGLLIQTSNMKLTKWDDLEDKGIGHWKFSCIMSFPWRPILSATG YTEYYFDPQSGRVCRHVEHWNVPKMALLKQLLRPSKGRRTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	0	1
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	1.0	0.9442
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	1.4	0.9429
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	1.7	0.9418
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	5.3	0.9161
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	6.0	0.9211
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	7.2	0.9328
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	8.1	0.9121
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10008781 [exp]	8.9	0.9233
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	8.9	0.9160
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	8.9	0.9134

Compare expression of checked genes

Lus10036387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.