Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01290 449 / 4e-141 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007916 [exp] 1876 / 0 AT4G01290 507 / 3e-163 unknown protein Lus10039283 [exp] 48 / 4e-05 AT4G01290 50 / 5e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089200 [exp] 833 / 0 AT4G01290 501 / 1e-160 unknown protein Potri.002G163000 [exp] 822 / 0 AT4G01290 499 / 1e-159 unknown protein Potri.004G073400 [exp] 73 / 8e-13 AT4G01290 60 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036389 pacid=23174420 polypeptide=Lus10036389 locus=Lus10036389.g ID=Lus10036389.BGIv1.0 annot-version=v1.0 ATGAGTACAGTAAATGAAGAGCGTAATGGCGTGGATCTGCATGAGGACGCCGGCTCGGAATCTCAAAAAAGGTCGAGATTGCTGTACACTCGAGAGTTTC TATTATCTCTTAGCGAGTTGGATGTTTGCAAAAGGCTGCCAAGTGGGTTTGACCAGTCACTTTTGAGTGAATTTGAGGATACTTCTCAAGATCGGTTTCG GATCTCTGGTGGTTTGTCGTCACAAGGTTATAAGCGGCCAGAGTATGGTTCTTCCCCACCAACCAGAGGAGATTCCAGCAATTTCTCTAGGGGGATTCAT GGAAGATGGGATAACCGTTCCTCAGTTAGAAGTGATCGTGACAGTGATTCACAATCCGATATGGAATCAGATACTGGAAGACGTTATGGCAACCAATCTC GGCGAGCTACGCAGGCTCCTGAACAGGATGGACTTCTTGGAAGTGGTTCTTTCCCAAGACCACCTGGATATGCGGTTGGCTCATCAACTTCAAAGTTCCG AGTGAATAGTGATAGTCATCAGCTTAGTAGGTGTAATGAACCGTATCATCCACCTCGTCCTTATAAGGCTGTTCCTCATTCCCGGAAGGAAACCAATGAC TCATTTAATGATGAAACTTTTGGCTCTTCTGAGTCCACAGACGTGGATAGAGAAGAAGAGGAAAGAAAGCGTAGAGATACCTTTGAGTTGTTAAGGAAGG AACAGCATAAAGCTTTTCTTGAGAGGCAGAAGTTGAATCCAGGAAAGGGTAAAGATGAGTTTATTTCTTCATTGATGGACGATTCAAAAGATGACAATCG AAGTCAACGAAGAAGCACTCCATTGGATGGACCGGTGTCAACTAATGATTCTCAAAAAAGTAACATCTCATCTGCACCTGTATCTAGACCTCTAGTGCCT CCTGGATTTTTGAGTGGTGCAACGGATAAGAGTGCTGGCACTAAAGCTACGGCCAACACACAGTTAGAGGTAGTCGATGAGCTTGAAGGCAGTCTTTTAC ACAATAAAGGGAGCAATTTCTTGAATGGAGCTTCACATAATCAAGAACAGATGCAGCCTCTGGTGCCACTAAAAGTAAGTGCGCAACAACTTGGCAATGT TAGTACTGATGTTTCAATCAATGGCAGCAAAAGTCAAAAGTCTGTGGATATACCTTCGGCGGTGGATTTTTCAAGCAAGCTAATTGGGAAAGATGCTCAA TGTTACGAGACTCCCAAACTCTTGGAAGTTTCTGAAAATCCAAAGAACAGTGGAATTATAGATCTGAGCCGCCAAGATGTAATGAAAGGCCAATTCATTG GTGGGTCCGGCCCGCCTGCCTCCACCTCAATTCTGGAGAGGTTTTTTGGAAATGCATCAGCTCTAGATGGTGATTCTTCCGGTTCTATTGAGCATAATGA TGCCAAAACGGACGACACGTTGGTTTCTTCTGATGTACACTCTTCTAAGTTTGCTCAATGGTTTCTTGAAGAAGAAAAGAATCAAGTTGATGATGTCCCA TCTGGTGAGTCAAACAATTTGCTCTCTCTGATTGTGGGCGCTGAAAAAGGTTTGCCTCAGGCTTTTGGTGGTAAAACTACTGAGCGCTTCTTGCCAGACT TGTCCATCCAAAATGGTGCATTTGAAGGCAGGGATGAGAGATCAAGCTCAGTTGTGGCTACTGCAGCTGATCTTGGAAAAAACAAGCACATGTTCTTCAG TAATAGTAATAGCAAACCGGAGGAAGTTTCAGCAGTGCTTACATGTGAAGACCTTGAGCAGTCAATACTGTCGGAGATTCCTGAAAGCGGTTCATCATTG CCTGCTAGTGAACCCGACTGGAAAGCTGGTGGTCAGCAGAAAGCCAATGTTGATCTTCTCTCCTTGTTGCAGAAGGGAACAAGCTTGAATGGTGACGTGC CTTCTGCCATTCATGGGGCTAAGTCCGTAGAAAACATACAGGATGTAGAAGAACCAAGAGGTGGTGGGCCTCCAGGCATCTCCATACGGTCAAATGCTGT GCATTCATCTATTTCCGGAAAGCCTTTGACTCTAGAAACTCTGTTTGGAACTGCTTTTATGAAAGAACTGCAGCCAGTAGGTGTCGAAAAGAGCAAAGCT GGTATTACAAAAGTTGATGGCCCTGAATCCCATGGTGATTCTTACCCTGAAATTGATGCTGGTATGCTTTGGTCTACTTTAGATATGACATCAAGCGTAC CTGATCTGCAAAACGGTATCGCAGCATCAAACCAGCAGCAGGAGATTAAGTCAGATAGGGCTGAAGACCATCTTGGAGGGTTTAATTCTCGTAACAAAGA ATTGGTCTCTAGACATGGTGGATTTGATCCGTCTTTCCCGTTTGGGTTCCGGGAGGAGGACAACCTGACCAGAGGCAATCACCCTCTGAATCCACATGGT AGGAGCATATCTAATAGGATTGAAGTGATGGCTACAGAAGAGACGCAAGTTGACATTGCTCAAAAGCTTGCAGCTTTAAGTTCTTCGTTCAGAGATGAAA GGCTTATCACAAGGGGTCAGCAAGATGGTCCATCTTTTGGCCGCGGTCCTTACGACATGAGGGAACTGGAGGCTCAGTATCAAAATCATCGGGTCCGACC ATCTTCACAGCAGCTTCATGCCCCTCATCAAATGAATCATGGTGGGTCGATGTTCCACCAGATGGATTCTCATTCTTCAAACCTTGGTACTCAGATGAAG TTCATATCCCCAGAGAATATCATTCATCGCGATGCTCCAAATAATCCGTTTCCTGGGAATATGCTACGTCCACCTTTCCATCAACCTAACAGCACGATCA CAGGGTTTGAACCTAGTCCACCGAATGCGATACTGCAGCAGATGCATATGGCCGGCAATTTCCTTCCTCACATGTCACATGGATTTCCTAGAGGAGGTTT ACATCCTAACAACCAGATGCCGGGTTTTGCTCCAGATCCAAATTCAATGCATGGATTCCCTTTCGGCCAGAGGCAGCCCAACTTAGGTCCGTTTGGGATT CCACCCCATGGTTCCGGAGCCGAGAGTGGAAGCAGCCATCCAGAAGCTTTCCAGAAGCTAATTGAGATGGAACTCAAGTCAAAGGCGGCGGGGAAGCAGG TCCACCCGTTGTCTGGTCAAGAGCTGGACATGGGTTTTGGATACAGATAA
AA sequence Show only first row Show all	>Lus10036389 pacid=23174420 polypeptide=Lus10036389 locus=Lus10036389.g ID=Lus10036389.BGIv1.0 annot-version=v1.0 MSTVNEERNGVDLHEDAGSESQKRSRLLYTREFLLSLSELDVCKRLPSGFDQSLLSEFEDTSQDRFRISGGLSSQGYKRPEYGSSPPTRGDSSNFSRGIH GRWDNRSSVRSDRDSDSQSDMESDTGRRYGNQSRRATQAPEQDGLLGSGSFPRPPGYAVGSSTSKFRVNSDSHQLSRCNEPYHPPRPYKAVPHSRKETND SFNDETFGSSESTDVDREEEERKRRDTFELLRKEQHKAFLERQKLNPGKGKDEFISSLMDDSKDDNRSQRRSTPLDGPVSTNDSQKSNISSAPVSRPLVP PGFLSGATDKSAGTKATANTQLEVVDELEGSLLHNKGSNFLNGASHNQEQMQPLVPLKVSAQQLGNVSTDVSINGSKSQKSVDIPSAVDFSSKLIGKDAQ CYETPKLLEVSENPKNSGIIDLSRQDVMKGQFIGGSGPPASTSILERFFGNASALDGDSSGSIEHNDAKTDDTLVSSDVHSSKFAQWFLEEEKNQVDDVP SGESNNLLSLIVGAEKGLPQAFGGKTTERFLPDLSIQNGAFEGRDERSSSVVATAADLGKNKHMFFSNSNSKPEEVSAVLTCEDLEQSILSEIPESGSSL PASEPDWKAGGQQKANVDLLSLLQKGTSLNGDVPSAIHGAKSVENIQDVEEPRGGGPPGISIRSNAVHSSISGKPLTLETLFGTAFMKELQPVGVEKSKA GITKVDGPESHGDSYPEIDAGMLWSTLDMTSSVPDLQNGIAASNQQQEIKSDRAEDHLGGFNSRNKELVSRHGGFDPSFPFGFREEDNLTRGNHPLNPHG RSISNRIEVMATEETQVDIAQKLAALSSSFRDERLITRGQQDGPSFGRGPYDMRELEAQYQNHRVRPSSQQLHAPHQMNHGGSMFHQMDSHSSNLGTQMK FISPENIIHRDAPNNPFPGNMLRPPFHQPNSTITGFEPSPPNAILQQMHMAGNFLPHMSHGFPRGGLHPNNQMPGFAPDPNSMHGFPFGQRQPNLGPFGI PPHGSGAESGSSHPEAFQKLIEMELKSKAAGKQVHPLSGQELDMGFGYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01290			unknown protein		Lus10036389 [exp]	0	1
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	1.0	0.8293
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10029887 [exp]	2.8	0.8030
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	5.2	0.7787
AT1G19870		IQD32	IQ-domain 32 (.1)		Lus10033167 [exp]	6.0	0.8206
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	6.9	0.7968
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	8.4	0.7848
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	12.2	0.7625
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	12.5	0.7680
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	13.5	0.8038
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	16.1	0.7999

Compare expression of checked genes

Lus10036389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.