Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01510 795 / 0 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68010 55 / 8e-08 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 49 / 4e-06 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007913 [exp] 1100 / 0 AT1G01510 920 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006708 [exp] 61 / 8e-10 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10025796 [exp] 58 / 1e-08 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 57 / 1e-08 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 57 / 2e-08 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 56 / 4e-08 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014115 [exp] 56 / 9e-08 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10035867 [exp] 55 / 1e-07 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 54 / 2e-07 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089400 [exp] 929 / 0 AT1G01510 808 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G163200 [exp] 908 / 0 AT1G01510 815 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G073500 [exp] 54 / 1e-07 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 50 / 3e-06 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.001G183700 [exp] 50 / 4e-06 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 49 / 5e-06 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10036393 pacid=23174392 polypeptide=Lus10036393 locus=Lus10036393.g ID=Lus10036393.BGIv1.0 annot-version=v1.0 ATGTCACACCGTAACAACAACCCGGCACCACCGCCTCTGCCACTAGTGGTCACTCTCAACTGCGTCGACGATTGCGGCATCGAGCAAGAATCCCTCTCCG GAGTGGCCGCAGTCGAACACGTCCCGCTAAGTCGTCTGGCCGATGGTAAGATCGAATCCGCCTCTGCCGTCCTCCTCCATTCCCTCGCTTACTTGCCTCG AGCTGCTCAGCGGCGTCTCCGCCCTTACCAGCTCATCCTCTGCCTCGGCTCCGCCGACCGTGCGGTGGACTCTGCTCTCGCCGCCGACCTAGGTCTCCGA CTCGTCCACGTTGACACATCCAGGGCTGAGGAGATCGCCGATACGGTGATGGCGCTTTTTCTTGGATTGGTGCGTCGGACTCACTTGCTCTCTCGCCATG CCTTGTCTGCATCGGGATGGTTGGGATCGGTGCAGCCGCTTTGTAGAGGAATGAGGAGATGTAGAGGGATGGTATTGGGAATCGTCGGCAGATCTGCTTC TGCCAGAGCTCTAGCTAGTAGGAGCTTGGCGTTCAAGATGAGCGTTCTTTATTTCGATGTTTATCAGGGAAATGGAATGGTCAGCAGGTCCCCAATCACT TTTCCGTCAGCTGCTCGAAGAATGGATACTCTTAATGATTTGCTAGCTGCTAGTGACCTTATCTCGCTTCATTGTGCTTTAACTAACGAGACAGTTCAGA TATTGAGCGCAAGACACACACACCCACCCACCCACACACGTGCCTTTCTGGTGAATACAGGCAGCTGTCAGCTACTTGATGACTGTGCTTTGAAGCAGCT TTTGATTGATGGGACATTGGCTGGCTGTGCTTTGGATGGAGCTGAAGGTCCGCAGTGGATGGAAGCATGGGTAAAAGAGCTGCCCAATGTGTTGATACTT CCTCGCAGTGCAGATTACAGTGAAGAAGTGTGGATGGAGATACGAGAGAAGGCAATCTCTATATTACAATCATTTTTCTTTGATGGAGTTATCCCAAAGG ATGATATCTCTGACGCAGAAGAGGATGTAGATGAATTAGGTGACGAGACTGAACCTTTTCACAAACAAGACAAAGAGAGTTCTGTGCATATGACAGATGG TTTTAAGTTGAGTCCAGAAAGTAGCAATAGAAGAGCTATAGAACAATCAACTGAATCTCCTGGGCAGGCTCAGGTGAGTAGCTTGTCTCAAAACACTACA CCAAAGTCTGACGGAAGACGTAGTAGGTCAGGGAAAAAGGCTAAAAAGAGACACGGTCGACAAAAGGCAATGCAGAAATCAAGTGATCCTTCCCAACTAG AGAAGGAAAGTACTTCACATCAAGAAGATGATACAGCCTTGAGTGGCACTGACCAAGTTTTGAGTTCTGGATCCCGTTTTGCTTCTCCCGAAGCATCAAG AAGTAGGAAGACACCTATTATTGAGGCTATGCAAGAGTCTCCTTCTGACCAGTTTCTAAGCTCGAGCAAGCATCTCAGTGGAAAGCCTTTTGAACTTCTG AAAGATGGGTGTGTTATAGCTCTTTATGCAAGAGACAGACATGCCCTCCATGTGTCTAGGCAAAGAGTTAAAGGTGGTGGTTGGTTTTTGGATGCCATGT CATCTGTCACCAAAAGAGATCCTGCAGCACAGTTCCTTGTTGTTTACAGAAACAAGGAAACAATGGGACTCCGTTCTTTCGCTGCTGGTGGGAAGCTATT ACAGATTAACAGAAGAATGGAGTTTGTATTTGCGAGCCATAGCTTTGACGTGTGGGAGAGTTGGATGTTGGAAGGTCCCTTGGAAGAATGCAGGCTGGTC AACTGTAGAAACCCTTTGGCGGTGCTGGAGGTATGTATCGAGATTCTAGCGGCCGTAGGGGAAGACGATGGAGTTACTCGTTGGCTAGATTAG
AA sequence Show only first row Show all	>Lus10036393 pacid=23174392 polypeptide=Lus10036393 locus=Lus10036393.g ID=Lus10036393.BGIv1.0 annot-version=v1.0 MSHRNNNPAPPPLPLVVTLNCVDDCGIEQESLSGVAAVEHVPLSRLADGKIESASAVLLHSLAYLPRAAQRRLRPYQLILCLGSADRAVDSALAADLGLR LVHVDTSRAEEIADTVMALFLGLVRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGMVLGIVGRSASARALASRSLAFKMSVLYFDVYQGNGMVSRSPIT FPSAARRMDTLNDLLAASDLISLHCALTNETVQILSARHTHPPTHTRAFLVNTGSCQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKELPNVLIL PRSADYSEEVWMEIREKAISILQSFFFDGVIPKDDISDAEEDVDELGDETEPFHKQDKESSVHMTDGFKLSPESSNRRAIEQSTESPGQAQVSSLSQNTT PKSDGRRSRSGKKAKKRHGRQKAMQKSSDPSQLEKESTSHQEDDTALSGTDQVLSSGSRFASPEASRSRKTPIIEAMQESPSDQFLSSSKHLSGKPFELL KDGCVIALYARDRHALHVSRQRVKGGGWFLDAMSSVTKRDPAAQFLVVYRNKETMGLRSFAAGGKLLQINRRMEFVFASHSFDVWESWMLEGPLEECRLV NCRNPLAVLEVCIEILAAVGEDDGVTRWLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10036393 [exp]	0	1
AT5G38880			unknown protein		Lus10034366 [exp]	3.9	0.8563
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	7.7	0.8917
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	9.8	0.8763
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	11.2	0.8635
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	15.4	0.8610
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	17.0	0.8412
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	22.6	0.8730
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	24.1	0.8434
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	24.5	0.8614
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	26.2	0.8755

Compare expression of checked genes

Lus10036393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.